Gene : Sobic.001G437200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11638//PTHR11638:SF105 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  4586
Name:  ? Sobic.001G437200 Secondary Identifier:  ? PAC:37945320
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G437200 0.5kb upstream 0.5kb upstream 6874 true Chr01: 71551320-71558193 Sorghum bicolor
Sobic.001G437200 0.5kb upstream 0.5kb upstream 500 false Chr01: 71551320-71551819 Sorghum bicolor
Sobic.001G437200 0.5kb downstream 0.5kb downstream 6874 true Chr01: 71551820-71558693 Sorghum bicolor
Sobic.001G437200 0.5kb downstream 0.5kb downstream 500 false Chr01: 71558194-71558693 Sorghum bicolor
Sobic.001G437200 1.0kb upstream 1.0kb upstream 7374 true Chr01: 71550820-71558193 Sorghum bicolor
Sobic.001G437200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 71550820-71551819 Sorghum bicolor
Sobic.001G437200 1.0kb downstream 1.0kb downstream 7374 true Chr01: 71551820-71559193 Sorghum bicolor
Sobic.001G437200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 71558194-71559193 Sorghum bicolor
Sobic.001G437200 2.0kb upstream 2.0kb upstream 8374 true Chr01: 71549820-71558193 Sorghum bicolor
Sobic.001G437200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 71549820-71551819 Sorghum bicolor
Sobic.001G437200 2.0kb downstream 2.0kb downstream 8374 true Chr01: 71551820-71560193 Sorghum bicolor
Sobic.001G437200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 71558194-71560193 Sorghum bicolor
Sobic.001G437200 5.0kb upstream 5.0kb upstream 11374 true Chr01: 71546820-71558193 Sorghum bicolor
Sobic.001G437200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 71546820-71551819 Sorghum bicolor
Sobic.001G437200 5.0kb downstream 5.0kb downstream 11374 true Chr01: 71551820-71563193 Sorghum bicolor
Sobic.001G437200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 71558194-71563193 Sorghum bicolor
Sobic.001G437200 10.0kb upstream 10.0kb upstream 16374 true Chr01: 71541820-71558193 Sorghum bicolor
Sobic.001G437200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 71541820-71551819 Sorghum bicolor
Sobic.001G437200 10.0kb downstream 10.0kb downstream 16374 true Chr01: 71551820-71568193 Sorghum bicolor
Sobic.001G437200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 71558194-71568193 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195600 5267 Panicoideae View MSA
124569271 5269 Grass View MSA
122047723 5273 Angiosperm View MSA
121348075 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.496       High
cufflinks 0.261       Low
cufflinks 2.001        
cufflinks 3.117       High
cufflinks 1.359        
cufflinks 1.362        
cufflinks 2.992       High
cufflinks 2.356        
cufflinks 1.516        
cufflinks 1.52        
cufflinks 0.86        
cufflinks 1.009        
cufflinks 0.721       Low
cufflinks 1.07        
cufflinks 1.159        
cufflinks 0.946        
cufflinks 2.899       High
cufflinks 3.776       High
cufflinks 0.672       Low
cufflinks 1.939        
cufflinks 1.589        
cufflinks 1.283        
cufflinks 1.008        
cufflinks 1.128        
cufflinks 0.726        
cufflinks 0.227       Low
cufflinks 1.163        
cufflinks 0.995        
cufflinks 9.558       High
cufflinks 1.774        

0 Strain