Gene : Sobic.001G441000 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12701:SF20 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIG5 Genomic Order:  4624
Name:  ? Sobic.001G441000 Secondary Identifier:  ? PAC:37941203
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G441000 0.5kb upstream 0.5kb upstream 4918 true Chr01: 71888506-71893423 Sorghum bicolor
Sobic.001G441000 0.5kb upstream 0.5kb upstream 500 false Chr01: 71888506-71889005 Sorghum bicolor
Sobic.001G441000 0.5kb downstream 0.5kb downstream 4918 true Chr01: 71889006-71893923 Sorghum bicolor
Sobic.001G441000 0.5kb downstream 0.5kb downstream 500 false Chr01: 71893424-71893923 Sorghum bicolor
Sobic.001G441000 1.0kb upstream 1.0kb upstream 5418 true Chr01: 71888006-71893423 Sorghum bicolor
Sobic.001G441000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 71888006-71889005 Sorghum bicolor
Sobic.001G441000 1.0kb downstream 1.0kb downstream 5418 true Chr01: 71889006-71894423 Sorghum bicolor
Sobic.001G441000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 71893424-71894423 Sorghum bicolor
Sobic.001G441000 2.0kb upstream 2.0kb upstream 6418 true Chr01: 71887006-71893423 Sorghum bicolor
Sobic.001G441000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 71887006-71889005 Sorghum bicolor
Sobic.001G441000 2.0kb downstream 2.0kb downstream 6418 true Chr01: 71889006-71895423 Sorghum bicolor
Sobic.001G441000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 71893424-71895423 Sorghum bicolor
Sobic.001G441000 5.0kb upstream 5.0kb upstream 9418 true Chr01: 71884006-71893423 Sorghum bicolor
Sobic.001G441000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 71884006-71889005 Sorghum bicolor
Sobic.001G441000 5.0kb downstream 5.0kb downstream 9418 true Chr01: 71889006-71898423 Sorghum bicolor
Sobic.001G441000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 71893424-71898423 Sorghum bicolor
Sobic.001G441000 10.0kb upstream 10.0kb upstream 14418 true Chr01: 71879006-71893423 Sorghum bicolor
Sobic.001G441000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 71879006-71889005 Sorghum bicolor
Sobic.001G441000 10.0kb downstream 10.0kb downstream 14418 true Chr01: 71889006-71903423 Sorghum bicolor
Sobic.001G441000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 71893424-71903423 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182428 5267 Panicoideae View MSA
124569738 5269 Grass View MSA
122042109 5273 Angiosperm View MSA
121344883 5274 Embryophyte View MSA
123380122 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.323     High  
cufflinks 4.423       Low
cufflinks 22.196     High High
cufflinks 30.453     High High
cufflinks 11.921        
cufflinks 12.816        
cufflinks 7.954        
cufflinks 5.006       Low
cufflinks 12.387        
cufflinks 11.215        
cufflinks 9.876        
cufflinks 8.017        
cufflinks 11.045        
cufflinks 12.207     High  
cufflinks 14.77     High  
cufflinks 9.554        
cufflinks 8.988        
cufflinks 8.484        
cufflinks 7.385        
cufflinks 11.654        
cufflinks 4.046       Low
cufflinks 16.451     High  
cufflinks 10.569        
cufflinks 8.835        
cufflinks 6.302       Low
cufflinks 3.299       Low
cufflinks 17.378     High High
cufflinks 22.432     High High
cufflinks 9.734        
cufflinks 15.741     High  

0 Strain