Gene : Sobic.001G433700 S. bicolor v3.1.1
Defline:  (1 of 1) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  4546
Name:  ? Sobic.001G433700 Secondary Identifier:  ? PAC:37938425
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ARO-PWY Sorghum bicolor pathologic  
Sbicolor PWY-6163 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G433700 0.5kb upstream 0.5kb upstream 4988 true Chr01: 71210340-71215327 Sorghum bicolor
Sobic.001G433700 0.5kb upstream 0.5kb upstream 500 false Chr01: 71210340-71210839 Sorghum bicolor
Sobic.001G433700 0.5kb downstream 0.5kb downstream 4988 true Chr01: 71210840-71215827 Sorghum bicolor
Sobic.001G433700 0.5kb downstream 0.5kb downstream 500 false Chr01: 71215328-71215827 Sorghum bicolor
Sobic.001G433700 1.0kb upstream 1.0kb upstream 5488 true Chr01: 71209840-71215327 Sorghum bicolor
Sobic.001G433700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 71209840-71210839 Sorghum bicolor
Sobic.001G433700 1.0kb downstream 1.0kb downstream 5488 true Chr01: 71210840-71216327 Sorghum bicolor
Sobic.001G433700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 71215328-71216327 Sorghum bicolor
Sobic.001G433700 2.0kb upstream 2.0kb upstream 6488 true Chr01: 71208840-71215327 Sorghum bicolor
Sobic.001G433700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 71208840-71210839 Sorghum bicolor
Sobic.001G433700 2.0kb downstream 2.0kb downstream 6488 true Chr01: 71210840-71217327 Sorghum bicolor
Sobic.001G433700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 71215328-71217327 Sorghum bicolor
Sobic.001G433700 5.0kb upstream 5.0kb upstream 9488 true Chr01: 71205840-71215327 Sorghum bicolor
Sobic.001G433700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 71205840-71210839 Sorghum bicolor
Sobic.001G433700 5.0kb downstream 5.0kb downstream 9488 true Chr01: 71210840-71220327 Sorghum bicolor
Sobic.001G433700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 71215328-71220327 Sorghum bicolor
Sobic.001G433700 10.0kb upstream 10.0kb upstream 14488 true Chr01: 71200840-71215327 Sorghum bicolor
Sobic.001G433700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 71200840-71210839 Sorghum bicolor
Sobic.001G433700 10.0kb downstream 10.0kb downstream 14488 true Chr01: 71210840-71225327 Sorghum bicolor
Sobic.001G433700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 71215328-71225327 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
122196469 5267 Panicoideae View MSA
124574152 5269 Grass View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.289     High  
cufflinks 15.063     High Low
cufflinks 17.526     High Low
cufflinks 20.142     High  
cufflinks 29.741     High  
cufflinks 16.819     High Low
cufflinks 40.225     High  
cufflinks 33.16     High  
cufflinks 20.506     High  
cufflinks 22.992     High  
cufflinks 49.263     High  
cufflinks 52.027     High  
cufflinks 56.211     High High
cufflinks 43.144     High  
cufflinks 27.885     High  
cufflinks 17.324     High Low
cufflinks 45.378     High  
cufflinks 44.802     High  
cufflinks 20.047     High  
cufflinks 43.806     High  
cufflinks 20.699     High  
cufflinks 47.482     High  
cufflinks 51.162     High  
cufflinks 46.956     High  
cufflinks 14.133     High Low
cufflinks 10.917     High Low
cufflinks 48.963     High  
cufflinks 10.799     High Low
cufflinks 55.523     High High
cufflinks 34.378     High  

0 Strain