Gene : Sobic.001G544200 S. bicolor v3.1.1
Defline:  (1 of 1) K10848 - DNA excision repair protein ERCC-4 (ERCC4, XPF) Genomic Order:  5726
Name:  ? Sobic.001G544200 Secondary Identifier:  ? PAC:37942366
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G544200 0.5kb upstream 0.5kb upstream 5052 true Chr01: 80843709-80848760 Sorghum bicolor
Sobic.001G544200 0.5kb upstream 0.5kb upstream 500 false Chr01: 80843709-80844208 Sorghum bicolor
Sobic.001G544200 0.5kb downstream 0.5kb downstream 5052 true Chr01: 80844209-80849260 Sorghum bicolor
Sobic.001G544200 0.5kb downstream 0.5kb downstream 500 false Chr01: 80848761-80849260 Sorghum bicolor
Sobic.001G544200 1.0kb upstream 1.0kb upstream 5552 true Chr01: 80843209-80848760 Sorghum bicolor
Sobic.001G544200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 80843209-80844208 Sorghum bicolor
Sobic.001G544200 1.0kb downstream 1.0kb downstream 5552 true Chr01: 80844209-80849760 Sorghum bicolor
Sobic.001G544200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 80848761-80849760 Sorghum bicolor
Sobic.001G544200 2.0kb upstream 2.0kb upstream 6552 true Chr01: 80842209-80848760 Sorghum bicolor
Sobic.001G544200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 80842209-80844208 Sorghum bicolor
Sobic.001G544200 2.0kb downstream 2.0kb downstream 6552 true Chr01: 80844209-80850760 Sorghum bicolor
Sobic.001G544200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 80848761-80850760 Sorghum bicolor
Sobic.001G544200 5.0kb upstream 5.0kb upstream 9552 true Chr01: 80839209-80848760 Sorghum bicolor
Sobic.001G544200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 80839209-80844208 Sorghum bicolor
Sobic.001G544200 5.0kb downstream 5.0kb downstream 9552 true Chr01: 80844209-80853760 Sorghum bicolor
Sobic.001G544200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 80848761-80853760 Sorghum bicolor
Sobic.001G544200 10.0kb upstream 10.0kb upstream 14552 true Chr01: 80834209-80848760 Sorghum bicolor
Sobic.001G544200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 80834209-80844208 Sorghum bicolor
Sobic.001G544200 10.0kb downstream 10.0kb downstream 14552 true Chr01: 80844209-80858760 Sorghum bicolor
Sobic.001G544200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 80848761-80858760 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026556 5273 Angiosperm View MSA
122199425 5267 Panicoideae View MSA
124575342 5269 Grass View MSA
121346199 5274 Embryophyte View MSA
123424869 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.22       Low
cufflinks 1.489       Low
cufflinks 3.654        
cufflinks 4.455        
cufflinks 7.371       High
cufflinks 7.324       High
cufflinks 3.264        
cufflinks 2.183       Low
cufflinks 9.797       High
cufflinks 7.938       High
cufflinks 5.692        
cufflinks 6.068        
cufflinks 5.816        
cufflinks 4.671        
cufflinks 5.02        
cufflinks 2.745       Low
cufflinks 2.505       Low
cufflinks 3.019        
cufflinks 5.342        
cufflinks 3.305        
cufflinks 9.431       High
cufflinks 5.215        
cufflinks 4.854        
cufflinks 4.79        
cufflinks 3.202        
cufflinks 1.782       Low
cufflinks 6.235        
cufflinks 6.769        
cufflinks 3.178        
cufflinks 4.751        

0 Strain