Gene : Sobic.001G542450 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR12741:SF5 - CALLOSE SYNTHASE 10 Genomic Order:  5708
Name:  ? Sobic.001G542450 Secondary Identifier:  ? PAC:37939242
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6773 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G542450 0.5kb upstream 0.5kb upstream 3812 true Chr01: 80603465-80607276 Sorghum bicolor
Sobic.001G542450 0.5kb upstream 0.5kb upstream 500 false Chr01: 80606777-80607276 Sorghum bicolor
Sobic.001G542450 0.5kb downstream 0.5kb downstream 3812 true Chr01: 80602965-80606776 Sorghum bicolor
Sobic.001G542450 0.5kb downstream 0.5kb downstream 500 false Chr01: 80602965-80603464 Sorghum bicolor
Sobic.001G542450 1.0kb upstream 1.0kb upstream 4312 true Chr01: 80603465-80607776 Sorghum bicolor
Sobic.001G542450 1.0kb upstream 1.0kb upstream 1000 false Chr01: 80606777-80607776 Sorghum bicolor
Sobic.001G542450 1.0kb downstream 1.0kb downstream 4312 true Chr01: 80602465-80606776 Sorghum bicolor
Sobic.001G542450 1.0kb downstream 1.0kb downstream 1000 false Chr01: 80602465-80603464 Sorghum bicolor
Sobic.001G542450 2.0kb upstream 2.0kb upstream 5312 true Chr01: 80603465-80608776 Sorghum bicolor
Sobic.001G542450 2.0kb upstream 2.0kb upstream 2000 false Chr01: 80606777-80608776 Sorghum bicolor
Sobic.001G542450 2.0kb downstream 2.0kb downstream 5312 true Chr01: 80601465-80606776 Sorghum bicolor
Sobic.001G542450 2.0kb downstream 2.0kb downstream 2000 false Chr01: 80601465-80603464 Sorghum bicolor
Sobic.001G542450 5.0kb upstream 5.0kb upstream 8312 true Chr01: 80603465-80611776 Sorghum bicolor
Sobic.001G542450 5.0kb upstream 5.0kb upstream 5000 false Chr01: 80606777-80611776 Sorghum bicolor
Sobic.001G542450 5.0kb downstream 5.0kb downstream 8312 true Chr01: 80598465-80606776 Sorghum bicolor
Sobic.001G542450 5.0kb downstream 5.0kb downstream 5000 false Chr01: 80598465-80603464 Sorghum bicolor
Sobic.001G542450 10.0kb upstream 10.0kb upstream 13312 true Chr01: 80603465-80616776 Sorghum bicolor
Sobic.001G542450 10.0kb upstream 10.0kb upstream 10000 false Chr01: 80606777-80616776 Sorghum bicolor
Sobic.001G542450 10.0kb downstream 10.0kb downstream 13312 true Chr01: 80593465-80606776 Sorghum bicolor
Sobic.001G542450 10.0kb downstream 10.0kb downstream 10000 false Chr01: 80593465-80603464 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198297 5267 Panicoideae View MSA
124589873 5269 Grass View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.815     High  
cufflinks 23.982     High Low
cufflinks 27.349     High Low
cufflinks 34.297     High  
cufflinks 59.538     High High
cufflinks 45.678     High  
cufflinks 35.159     High  
cufflinks 26.268     High Low
cufflinks 69.658     High High
cufflinks 66.393     High High
cufflinks 41.436     High  
cufflinks 46.368     High  
cufflinks 58.751     High High
cufflinks 39.156     High  
cufflinks 57.726     High High
cufflinks 37.849     High  
cufflinks 31.198     High  
cufflinks 34.153     High  
cufflinks 27.533     High Low
cufflinks 32.393     High  
cufflinks 71.734     High High
cufflinks 42.387     High  
cufflinks 40.412     High  
cufflinks 42.017     High  
cufflinks 30.323     High Low
cufflinks 21.215     High Low
cufflinks 45.364     High  
cufflinks 49.924     High  
cufflinks 36.579     High  
cufflinks 59.672     High High

0 Strain