Gene : Sobic.005G228700 S. bicolor v3.1.1
Defline:  (1 of 2) PF01439 - Metallothionein (Metallothio_2) Genomic Order:  2401
Name:  ? Sobic.005G228700 Secondary Identifier:  ? PAC:37924549
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G228700 0.5kb upstream 0.5kb upstream 1540 true Chr05: 71598642-71600181 Sorghum bicolor
Sobic.005G228700 0.5kb upstream 0.5kb upstream 500 false Chr05: 71598642-71599141 Sorghum bicolor
Sobic.005G228700 0.5kb downstream 0.5kb downstream 1540 true Chr05: 71599142-71600681 Sorghum bicolor
Sobic.005G228700 0.5kb downstream 0.5kb downstream 500 false Chr05: 71600182-71600681 Sorghum bicolor
Sobic.005G228700 1.0kb upstream 1.0kb upstream 2040 true Chr05: 71598142-71600181 Sorghum bicolor
Sobic.005G228700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 71598142-71599141 Sorghum bicolor
Sobic.005G228700 1.0kb downstream 1.0kb downstream 2040 true Chr05: 71599142-71601181 Sorghum bicolor
Sobic.005G228700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 71600182-71601181 Sorghum bicolor
Sobic.005G228700 2.0kb upstream 2.0kb upstream 3040 true Chr05: 71597142-71600181 Sorghum bicolor
Sobic.005G228700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 71597142-71599141 Sorghum bicolor
Sobic.005G228700 2.0kb downstream 2.0kb downstream 3040 true Chr05: 71599142-71602181 Sorghum bicolor
Sobic.005G228700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 71600182-71602181 Sorghum bicolor
Sobic.005G228700 5.0kb upstream 5.0kb upstream 6040 true Chr05: 71594142-71600181 Sorghum bicolor
Sobic.005G228700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 71594142-71599141 Sorghum bicolor
Sobic.005G228700 5.0kb downstream 5.0kb downstream 6040 true Chr05: 71599142-71605181 Sorghum bicolor
Sobic.005G228700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 71600182-71605181 Sorghum bicolor
Sobic.005G228700 10.0kb upstream 10.0kb upstream 11040 true Chr05: 71589142-71600181 Sorghum bicolor
Sobic.005G228700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 71589142-71599141 Sorghum bicolor
Sobic.005G228700 10.0kb downstream 10.0kb downstream 11040 true Chr05: 71599142-71610181 Sorghum bicolor
Sobic.005G228700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 71600182-71610181 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194041 5267 Panicoideae View MSA
124590261 5269 Grass View MSA
122044110 5273 Angiosperm View MSA
121310239 5274 Embryophyte View MSA
123347784 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.392       Low
cufflinks 2996.31     High  
cufflinks 1162.659     High  
cufflinks 2435.844     High  
cufflinks 60.036     High Low
cufflinks 2359.504     High  
cufflinks 957.458     High  
cufflinks 779.814     High  
cufflinks 946.472     High  
cufflinks 1148.225     High  
cufflinks 1219.993     High  
cufflinks 1623.817     High  
cufflinks 546.645     High  
cufflinks 2083.429     High  
cufflinks 596.725     High  
cufflinks 1673.388     High  
cufflinks 877.868     High  
cufflinks 795.536     High  
cufflinks 723.232     High  
cufflinks 905.371     High  
cufflinks 1.427       Low
cufflinks 1031.669     High  
cufflinks 1262.15     High  
cufflinks 978.238     High  
cufflinks 2242.886     High  
cufflinks 2314.382     High  
cufflinks 2438.944     High  
cufflinks 12.616     High Low
cufflinks 307.366     High  
cufflinks 1246.681     High  

0 Strain