Gene : Sobic.001G539940 S. bicolor v3.1.1
Defline:  (1 of 76) PF01357//PF03330 - Pollen allergen (Pollen_allerg_1) // Rare lipoprotein A (RlpA)-like double-psi beta-barrel (DPBB_1) Genomic Order:  5680
Name:  ? Sobic.001G539940 Secondary Identifier:  ? PAC:37940052
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G539940 0.5kb upstream 0.5kb upstream 1788 true Chr01: 80277240-80279027 Sorghum bicolor
Sobic.001G539940 0.5kb upstream 0.5kb upstream 500 false Chr01: 80278528-80279027 Sorghum bicolor
Sobic.001G539940 0.5kb downstream 0.5kb downstream 1788 true Chr01: 80276740-80278527 Sorghum bicolor
Sobic.001G539940 0.5kb downstream 0.5kb downstream 500 false Chr01: 80276740-80277239 Sorghum bicolor
Sobic.001G539940 1.0kb upstream 1.0kb upstream 2288 true Chr01: 80277240-80279527 Sorghum bicolor
Sobic.001G539940 1.0kb upstream 1.0kb upstream 1000 false Chr01: 80278528-80279527 Sorghum bicolor
Sobic.001G539940 1.0kb downstream 1.0kb downstream 2288 true Chr01: 80276240-80278527 Sorghum bicolor
Sobic.001G539940 1.0kb downstream 1.0kb downstream 1000 false Chr01: 80276240-80277239 Sorghum bicolor
Sobic.001G539940 2.0kb upstream 2.0kb upstream 3288 true Chr01: 80277240-80280527 Sorghum bicolor
Sobic.001G539940 2.0kb upstream 2.0kb upstream 2000 false Chr01: 80278528-80280527 Sorghum bicolor
Sobic.001G539940 2.0kb downstream 2.0kb downstream 3288 true Chr01: 80275240-80278527 Sorghum bicolor
Sobic.001G539940 2.0kb downstream 2.0kb downstream 2000 false Chr01: 80275240-80277239 Sorghum bicolor
Sobic.001G539940 5.0kb upstream 5.0kb upstream 6288 true Chr01: 80277240-80283527 Sorghum bicolor
Sobic.001G539940 5.0kb upstream 5.0kb upstream 5000 false Chr01: 80278528-80283527 Sorghum bicolor
Sobic.001G539940 5.0kb downstream 5.0kb downstream 6288 true Chr01: 80272240-80278527 Sorghum bicolor
Sobic.001G539940 5.0kb downstream 5.0kb downstream 5000 false Chr01: 80272240-80277239 Sorghum bicolor
Sobic.001G539940 10.0kb upstream 10.0kb upstream 11288 true Chr01: 80277240-80288527 Sorghum bicolor
Sobic.001G539940 10.0kb upstream 10.0kb upstream 10000 false Chr01: 80278528-80288527 Sorghum bicolor
Sobic.001G539940 10.0kb downstream 10.0kb downstream 11288 true Chr01: 80267240-80278527 Sorghum bicolor
Sobic.001G539940 10.0kb downstream 10.0kb downstream 10000 false Chr01: 80267240-80277239 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994907 5273 Angiosperm View MSA
122182056 5267 Panicoideae View MSA
124586067 5269 Grass View MSA
121265116 5274 Embryophyte View MSA
123303521 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.046     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.499        
cufflinks 0.057     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.042     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 191.387     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.906        

0 Strain