Gene : Sobic.001G539820 S. bicolor v3.1.1
Defline:  (1 of 76) PF01357//PF03330 - Pollen allergen (Pollen_allerg_1) // Rare lipoprotein A (RlpA)-like double-psi beta-barrel (DPBB_1) Genomic Order:  5678
Name:  ? Sobic.001G539820 Secondary Identifier:  ? PAC:37944139
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G539820 0.5kb upstream 0.5kb upstream 1800 true Chr01: 80262308-80264107 Sorghum bicolor
Sobic.001G539820 0.5kb upstream 0.5kb upstream 500 false Chr01: 80262308-80262807 Sorghum bicolor
Sobic.001G539820 0.5kb downstream 0.5kb downstream 1800 true Chr01: 80262808-80264607 Sorghum bicolor
Sobic.001G539820 0.5kb downstream 0.5kb downstream 500 false Chr01: 80264108-80264607 Sorghum bicolor
Sobic.001G539820 1.0kb upstream 1.0kb upstream 2300 true Chr01: 80261808-80264107 Sorghum bicolor
Sobic.001G539820 1.0kb upstream 1.0kb upstream 1000 false Chr01: 80261808-80262807 Sorghum bicolor
Sobic.001G539820 1.0kb downstream 1.0kb downstream 2300 true Chr01: 80262808-80265107 Sorghum bicolor
Sobic.001G539820 1.0kb downstream 1.0kb downstream 1000 false Chr01: 80264108-80265107 Sorghum bicolor
Sobic.001G539820 2.0kb upstream 2.0kb upstream 3300 true Chr01: 80260808-80264107 Sorghum bicolor
Sobic.001G539820 2.0kb upstream 2.0kb upstream 2000 false Chr01: 80260808-80262807 Sorghum bicolor
Sobic.001G539820 2.0kb downstream 2.0kb downstream 3300 true Chr01: 80262808-80266107 Sorghum bicolor
Sobic.001G539820 2.0kb downstream 2.0kb downstream 2000 false Chr01: 80264108-80266107 Sorghum bicolor
Sobic.001G539820 5.0kb upstream 5.0kb upstream 6300 true Chr01: 80257808-80264107 Sorghum bicolor
Sobic.001G539820 5.0kb upstream 5.0kb upstream 5000 false Chr01: 80257808-80262807 Sorghum bicolor
Sobic.001G539820 5.0kb downstream 5.0kb downstream 6300 true Chr01: 80262808-80269107 Sorghum bicolor
Sobic.001G539820 5.0kb downstream 5.0kb downstream 5000 false Chr01: 80264108-80269107 Sorghum bicolor
Sobic.001G539820 10.0kb upstream 10.0kb upstream 11300 true Chr01: 80252808-80264107 Sorghum bicolor
Sobic.001G539820 10.0kb upstream 10.0kb upstream 10000 false Chr01: 80252808-80262807 Sorghum bicolor
Sobic.001G539820 10.0kb downstream 10.0kb downstream 11300 true Chr01: 80262808-80274107 Sorghum bicolor
Sobic.001G539820 10.0kb downstream 10.0kb downstream 10000 false Chr01: 80264108-80274107 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994907 5273 Angiosperm View MSA
122182056 5267 Panicoideae View MSA
124586067 5269 Grass View MSA
121265116 5274 Embryophyte View MSA
123303521 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.513        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.065     Low  
cufflinks 0.014     Low  
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 119.337     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.025     Low  
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.076     Low  
cufflinks 0.922       High

0 Strain