Gene : Sobic.001G537100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12215:SF10 - L-AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE-PHOSPHOPANTETHEINYL TRANSFERASE Genomic Order:  5648
Name:  ? Sobic.001G537100 Secondary Identifier:  ? PAC:37944854
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6012-1 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G537100 0.5kb upstream 0.5kb upstream 5331 true Chr01: 80007141-80012471 Sorghum bicolor
Sobic.001G537100 0.5kb upstream 0.5kb upstream 500 false Chr01: 80011972-80012471 Sorghum bicolor
Sobic.001G537100 0.5kb downstream 0.5kb downstream 5331 true Chr01: 80006641-80011971 Sorghum bicolor
Sobic.001G537100 0.5kb downstream 0.5kb downstream 500 false Chr01: 80006641-80007140 Sorghum bicolor
Sobic.001G537100 1.0kb upstream 1.0kb upstream 5831 true Chr01: 80007141-80012971 Sorghum bicolor
Sobic.001G537100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 80011972-80012971 Sorghum bicolor
Sobic.001G537100 1.0kb downstream 1.0kb downstream 5831 true Chr01: 80006141-80011971 Sorghum bicolor
Sobic.001G537100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 80006141-80007140 Sorghum bicolor
Sobic.001G537100 2.0kb upstream 2.0kb upstream 6831 true Chr01: 80007141-80013971 Sorghum bicolor
Sobic.001G537100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 80011972-80013971 Sorghum bicolor
Sobic.001G537100 2.0kb downstream 2.0kb downstream 6831 true Chr01: 80005141-80011971 Sorghum bicolor
Sobic.001G537100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 80005141-80007140 Sorghum bicolor
Sobic.001G537100 5.0kb upstream 5.0kb upstream 9831 true Chr01: 80007141-80016971 Sorghum bicolor
Sobic.001G537100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 80011972-80016971 Sorghum bicolor
Sobic.001G537100 5.0kb downstream 5.0kb downstream 9831 true Chr01: 80002141-80011971 Sorghum bicolor
Sobic.001G537100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 80002141-80007140 Sorghum bicolor
Sobic.001G537100 10.0kb upstream 10.0kb upstream 14831 true Chr01: 80007141-80021971 Sorghum bicolor
Sobic.001G537100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 80011972-80021971 Sorghum bicolor
Sobic.001G537100 10.0kb downstream 10.0kb downstream 14831 true Chr01: 79997141-80011971 Sorghum bicolor
Sobic.001G537100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 79997141-80007140 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183454 5267 Panicoideae View MSA
124570135 5269 Grass View MSA
122041832 5273 Angiosperm View MSA
123429078 5275 Viridiplantae View MSA
121344089 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.209        
cufflinks 0.73       Low
cufflinks 0.725       Low
cufflinks 1.137        
cufflinks 1.445        
cufflinks 2.717       High
cufflinks 1.838        
cufflinks 1.317        
cufflinks 1.702        
cufflinks 1.751        
cufflinks 1.454        
cufflinks 2.226        
cufflinks 1.596        
cufflinks 2.13        
cufflinks 1.838        
cufflinks 1.037       Low
cufflinks 2.034        
cufflinks 1.961        
cufflinks 0.704       Low
cufflinks 2.405       High
cufflinks 2.259        
cufflinks 2.324        
cufflinks 2.102        
cufflinks 2.173        
cufflinks 0.674       Low
cufflinks 0.617       Low
cufflinks 2.233        
cufflinks 0.775       Low
cufflinks 2.24        
cufflinks 1.945        

0 Strain