Gene : Sobic.001G536901 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR33650//PTHR33650:SF1 - FAMILY NOT NAMED // CEMA-LIKE PROTON EXTRUSION PROTEIN-LIKE PROTEIN Genomic Order:  5646
Name:  ? Sobic.001G536901 Secondary Identifier:  ? PAC:37941850
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G536901 0.5kb upstream 0.5kb upstream 5612 true Chr01: 79995168-80000779 Sorghum bicolor
Sobic.001G536901 0.5kb upstream 0.5kb upstream 500 false Chr01: 79995168-79995667 Sorghum bicolor
Sobic.001G536901 0.5kb downstream 0.5kb downstream 5612 true Chr01: 79995668-80001279 Sorghum bicolor
Sobic.001G536901 0.5kb downstream 0.5kb downstream 500 false Chr01: 80000780-80001279 Sorghum bicolor
Sobic.001G536901 1.0kb upstream 1.0kb upstream 6112 true Chr01: 79994668-80000779 Sorghum bicolor
Sobic.001G536901 1.0kb upstream 1.0kb upstream 1000 false Chr01: 79994668-79995667 Sorghum bicolor
Sobic.001G536901 1.0kb downstream 1.0kb downstream 6112 true Chr01: 79995668-80001779 Sorghum bicolor
Sobic.001G536901 1.0kb downstream 1.0kb downstream 1000 false Chr01: 80000780-80001779 Sorghum bicolor
Sobic.001G536901 2.0kb upstream 2.0kb upstream 7112 true Chr01: 79993668-80000779 Sorghum bicolor
Sobic.001G536901 2.0kb upstream 2.0kb upstream 2000 false Chr01: 79993668-79995667 Sorghum bicolor
Sobic.001G536901 2.0kb downstream 2.0kb downstream 7112 true Chr01: 79995668-80002779 Sorghum bicolor
Sobic.001G536901 2.0kb downstream 2.0kb downstream 2000 false Chr01: 80000780-80002779 Sorghum bicolor
Sobic.001G536901 5.0kb upstream 5.0kb upstream 10112 true Chr01: 79990668-80000779 Sorghum bicolor
Sobic.001G536901 5.0kb upstream 5.0kb upstream 5000 false Chr01: 79990668-79995667 Sorghum bicolor
Sobic.001G536901 5.0kb downstream 5.0kb downstream 10112 true Chr01: 79995668-80005779 Sorghum bicolor
Sobic.001G536901 5.0kb downstream 5.0kb downstream 5000 false Chr01: 80000780-80005779 Sorghum bicolor
Sobic.001G536901 10.0kb upstream 10.0kb upstream 15112 true Chr01: 79985668-80000779 Sorghum bicolor
Sobic.001G536901 10.0kb upstream 10.0kb upstream 10000 false Chr01: 79985668-79995667 Sorghum bicolor
Sobic.001G536901 10.0kb downstream 10.0kb downstream 15112 true Chr01: 79995668-80010779 Sorghum bicolor
Sobic.001G536901 10.0kb downstream 10.0kb downstream 10000 false Chr01: 80000780-80010779 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189690 5267 Panicoideae View MSA
124570581 5269 Grass View MSA
122044615 5273 Angiosperm View MSA
121350431 5274 Embryophyte View MSA
123427516 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.153        
cufflinks 15.816     High High
cufflinks 21.238     High High
cufflinks 3.799        
cufflinks 0.156        
cufflinks 3.952        
cufflinks 10.543       High
cufflinks 13.114     High High
cufflinks 0.167        
cufflinks 0.147        
cufflinks 0.073     Low  
cufflinks 0.072     Low  
cufflinks 0.174        
cufflinks 0.051     Low Low
cufflinks 2.838        
cufflinks 20.782     High High
cufflinks 7.123       High
cufflinks 14.561     High High
cufflinks 11.356     High High
cufflinks 5.787        
cufflinks 0.324        
cufflinks 0.027     Low Low
cufflinks 0.038     Low Low
cufflinks 0.069     Low Low
cufflinks 6.313        
cufflinks 13.223     High High
cufflinks 0.085     Low  
cufflinks 0.057     Low Low
cufflinks 12.21     High High
cufflinks 1.425        

0 Strain