Gene : Sobic.001G533100 S. bicolor v3.1.1
Defline:  (1 of 1) K05305 - fucokinase (FUK) Genomic Order:  5604
Name:  ? Sobic.001G533100 Secondary Identifier:  ? PAC:37939101
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G533100 0.5kb upstream 0.5kb upstream 6298 true Chr01: 79642555-79648852 Sorghum bicolor
Sobic.001G533100 0.5kb upstream 0.5kb upstream 500 false Chr01: 79642555-79643054 Sorghum bicolor
Sobic.001G533100 0.5kb downstream 0.5kb downstream 6298 true Chr01: 79643055-79649352 Sorghum bicolor
Sobic.001G533100 0.5kb downstream 0.5kb downstream 500 false Chr01: 79648853-79649352 Sorghum bicolor
Sobic.001G533100 1.0kb upstream 1.0kb upstream 6798 true Chr01: 79642055-79648852 Sorghum bicolor
Sobic.001G533100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 79642055-79643054 Sorghum bicolor
Sobic.001G533100 1.0kb downstream 1.0kb downstream 6798 true Chr01: 79643055-79649852 Sorghum bicolor
Sobic.001G533100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 79648853-79649852 Sorghum bicolor
Sobic.001G533100 2.0kb upstream 2.0kb upstream 7798 true Chr01: 79641055-79648852 Sorghum bicolor
Sobic.001G533100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 79641055-79643054 Sorghum bicolor
Sobic.001G533100 2.0kb downstream 2.0kb downstream 7798 true Chr01: 79643055-79650852 Sorghum bicolor
Sobic.001G533100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 79648853-79650852 Sorghum bicolor
Sobic.001G533100 5.0kb upstream 5.0kb upstream 10798 true Chr01: 79638055-79648852 Sorghum bicolor
Sobic.001G533100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 79638055-79643054 Sorghum bicolor
Sobic.001G533100 5.0kb downstream 5.0kb downstream 10798 true Chr01: 79643055-79653852 Sorghum bicolor
Sobic.001G533100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 79648853-79653852 Sorghum bicolor
Sobic.001G533100 10.0kb upstream 10.0kb upstream 15798 true Chr01: 79633055-79648852 Sorghum bicolor
Sobic.001G533100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 79633055-79643054 Sorghum bicolor
Sobic.001G533100 10.0kb downstream 10.0kb downstream 15798 true Chr01: 79643055-79658852 Sorghum bicolor
Sobic.001G533100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 79648853-79658852 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188198 5267 Panicoideae View MSA
124577010 5269 Grass View MSA
122043960 5273 Angiosperm View MSA
121344120 5274 Embryophyte View MSA
123379978 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.908        
cufflinks 5.523        
cufflinks 2.703       Low
cufflinks 2.207       Low
cufflinks 8.305       High
cufflinks 3.758       Low
cufflinks 5.051        
cufflinks 5.349        
cufflinks 7.148        
cufflinks 6.958        
cufflinks 6.023        
cufflinks 7.973        
cufflinks 7.961        
cufflinks 7.507        
cufflinks 7.2        
cufflinks 3.059       Low
cufflinks 5.025        
cufflinks 4.701        
cufflinks 3.013       Low
cufflinks 5.965        
cufflinks 9.413       High
cufflinks 6.312        
cufflinks 6.085        
cufflinks 6.876        
cufflinks 2.887       Low
cufflinks 6.511     High  
cufflinks 5.989        
cufflinks 4.261        
cufflinks 4.701        
cufflinks 7.104        

0 Strain