Gene : Sobic.001G524300 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12358//PTHR12358:SF43 - SPHINGOSINE KINASE // SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  5516
Name:  ? Sobic.001G524300 Secondary Identifier:  ? PAC:37939361
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7039 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G524300 0.5kb upstream 0.5kb upstream 4399 true Chr01: 78898085-78902483 Sorghum bicolor
Sobic.001G524300 0.5kb upstream 0.5kb upstream 500 false Chr01: 78901984-78902483 Sorghum bicolor
Sobic.001G524300 0.5kb downstream 0.5kb downstream 4399 true Chr01: 78897585-78901983 Sorghum bicolor
Sobic.001G524300 0.5kb downstream 0.5kb downstream 500 false Chr01: 78897585-78898084 Sorghum bicolor
Sobic.001G524300 1.0kb upstream 1.0kb upstream 4899 true Chr01: 78898085-78902983 Sorghum bicolor
Sobic.001G524300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 78901984-78902983 Sorghum bicolor
Sobic.001G524300 1.0kb downstream 1.0kb downstream 4899 true Chr01: 78897085-78901983 Sorghum bicolor
Sobic.001G524300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 78897085-78898084 Sorghum bicolor
Sobic.001G524300 2.0kb upstream 2.0kb upstream 5899 true Chr01: 78898085-78903983 Sorghum bicolor
Sobic.001G524300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 78901984-78903983 Sorghum bicolor
Sobic.001G524300 2.0kb downstream 2.0kb downstream 5899 true Chr01: 78896085-78901983 Sorghum bicolor
Sobic.001G524300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 78896085-78898084 Sorghum bicolor
Sobic.001G524300 5.0kb upstream 5.0kb upstream 8899 true Chr01: 78898085-78906983 Sorghum bicolor
Sobic.001G524300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 78901984-78906983 Sorghum bicolor
Sobic.001G524300 5.0kb downstream 5.0kb downstream 8899 true Chr01: 78893085-78901983 Sorghum bicolor
Sobic.001G524300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 78893085-78898084 Sorghum bicolor
Sobic.001G524300 10.0kb upstream 10.0kb upstream 13899 true Chr01: 78898085-78911983 Sorghum bicolor
Sobic.001G524300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 78901984-78911983 Sorghum bicolor
Sobic.001G524300 10.0kb downstream 10.0kb downstream 13899 true Chr01: 78888085-78901983 Sorghum bicolor
Sobic.001G524300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 78888085-78898084 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197669 5267 Panicoideae View MSA
124573457 5269 Grass View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.828        
cufflinks 7.527     High  
cufflinks 9.623     High High
cufflinks 10.174       High
cufflinks 4.337       Low
cufflinks 6.59        
cufflinks 7.631        
cufflinks 5.962        
cufflinks 5.407        
cufflinks 5.754        
cufflinks 3.693       Low
cufflinks 3.745       Low
cufflinks 4.649        
cufflinks 4.609        
cufflinks 7.032        
cufflinks 7.984       High
cufflinks 7.361        
cufflinks 9.245       High
cufflinks 5.144        
cufflinks 8.44       High
cufflinks 5.676        
cufflinks 6.189        
cufflinks 4.471        
cufflinks 4.377        
cufflinks 6.138        
cufflinks 5.217        
cufflinks 5.96        
cufflinks 3.685       Low
cufflinks 11.535     High High
cufflinks 7.745        

0 Strain