Gene : Sobic.001G526800 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Genomic Order:  5537
Name:  ? Sobic.001G526800 Secondary Identifier:  ? PAC:37942303
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G526800 0.5kb upstream 0.5kb upstream 16438 true Chr01: 79086698-79103135 Sorghum bicolor
Sobic.001G526800 0.5kb upstream 0.5kb upstream 500 false Chr01: 79086698-79087197 Sorghum bicolor
Sobic.001G526800 0.5kb downstream 0.5kb downstream 16438 true Chr01: 79087198-79103635 Sorghum bicolor
Sobic.001G526800 0.5kb downstream 0.5kb downstream 500 false Chr01: 79103136-79103635 Sorghum bicolor
Sobic.001G526800 1.0kb upstream 1.0kb upstream 16938 true Chr01: 79086198-79103135 Sorghum bicolor
Sobic.001G526800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 79086198-79087197 Sorghum bicolor
Sobic.001G526800 1.0kb downstream 1.0kb downstream 16938 true Chr01: 79087198-79104135 Sorghum bicolor
Sobic.001G526800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 79103136-79104135 Sorghum bicolor
Sobic.001G526800 2.0kb upstream 2.0kb upstream 17938 true Chr01: 79085198-79103135 Sorghum bicolor
Sobic.001G526800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 79085198-79087197 Sorghum bicolor
Sobic.001G526800 2.0kb downstream 2.0kb downstream 17938 true Chr01: 79087198-79105135 Sorghum bicolor
Sobic.001G526800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 79103136-79105135 Sorghum bicolor
Sobic.001G526800 5.0kb upstream 5.0kb upstream 20938 true Chr01: 79082198-79103135 Sorghum bicolor
Sobic.001G526800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 79082198-79087197 Sorghum bicolor
Sobic.001G526800 5.0kb downstream 5.0kb downstream 20938 true Chr01: 79087198-79108135 Sorghum bicolor
Sobic.001G526800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 79103136-79108135 Sorghum bicolor
Sobic.001G526800 10.0kb upstream 10.0kb upstream 25938 true Chr01: 79077198-79103135 Sorghum bicolor
Sobic.001G526800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 79077198-79087197 Sorghum bicolor
Sobic.001G526800 10.0kb downstream 10.0kb downstream 25938 true Chr01: 79087198-79113135 Sorghum bicolor
Sobic.001G526800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 79103136-79113135 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199113 5267 Panicoideae View MSA
124588626 5269 Grass View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.057     Low Low
cufflinks 1.965        
cufflinks 3.944       High
cufflinks 2.992       High
cufflinks 0.794        
cufflinks 1.77        
cufflinks 1.818        
cufflinks 0.477        
cufflinks 1.415        
cufflinks 0.466        
cufflinks 0.132       Low
cufflinks 0.682        
cufflinks 0.635        
cufflinks 1.014        
cufflinks 2.04        
cufflinks 3.484       High
cufflinks 1.857        
cufflinks 1.888        
cufflinks 2.212        
cufflinks 2.063        
cufflinks 1.952        
cufflinks 0.324        
cufflinks 0.463        
cufflinks 0.44        
cufflinks 0.04     Low Low
cufflinks 0.168       Low
cufflinks 1.87        
cufflinks 0.03     Low Low
cufflinks 2.502        
cufflinks 1.577        

0 Strain