Gene : Sobic.001G512200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR36738:SF1 - EXPRESSED PROTEIN Genomic Order:  5385
Name:  ? Sobic.001G512200 Secondary Identifier:  ? PAC:37939184
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G512200 0.5kb upstream 0.5kb upstream 3549 true Chr01: 78002805-78006353 Sorghum bicolor
Sobic.001G512200 0.5kb upstream 0.5kb upstream 500 false Chr01: 78005854-78006353 Sorghum bicolor
Sobic.001G512200 0.5kb downstream 0.5kb downstream 3549 true Chr01: 78002305-78005853 Sorghum bicolor
Sobic.001G512200 0.5kb downstream 0.5kb downstream 500 false Chr01: 78002305-78002804 Sorghum bicolor
Sobic.001G512200 1.0kb upstream 1.0kb upstream 4049 true Chr01: 78002805-78006853 Sorghum bicolor
Sobic.001G512200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 78005854-78006853 Sorghum bicolor
Sobic.001G512200 1.0kb downstream 1.0kb downstream 4049 true Chr01: 78001805-78005853 Sorghum bicolor
Sobic.001G512200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 78001805-78002804 Sorghum bicolor
Sobic.001G512200 2.0kb upstream 2.0kb upstream 5049 true Chr01: 78002805-78007853 Sorghum bicolor
Sobic.001G512200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 78005854-78007853 Sorghum bicolor
Sobic.001G512200 2.0kb downstream 2.0kb downstream 5049 true Chr01: 78000805-78005853 Sorghum bicolor
Sobic.001G512200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 78000805-78002804 Sorghum bicolor
Sobic.001G512200 5.0kb upstream 5.0kb upstream 8049 true Chr01: 78002805-78010853 Sorghum bicolor
Sobic.001G512200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 78005854-78010853 Sorghum bicolor
Sobic.001G512200 5.0kb downstream 5.0kb downstream 8049 true Chr01: 77997805-78005853 Sorghum bicolor
Sobic.001G512200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 77997805-78002804 Sorghum bicolor
Sobic.001G512200 10.0kb upstream 10.0kb upstream 13049 true Chr01: 78002805-78015853 Sorghum bicolor
Sobic.001G512200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 78005854-78015853 Sorghum bicolor
Sobic.001G512200 10.0kb downstream 10.0kb downstream 13049 true Chr01: 77992805-78005853 Sorghum bicolor
Sobic.001G512200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 77992805-78002804 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041422 5273 Angiosperm View MSA
122186192 5267 Panicoideae View MSA
124573058 5269 Grass View MSA
121347775 5274 Embryophyte View MSA
123423846 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.128       Low
cufflinks 3.528        
cufflinks 1.438        
cufflinks 0.238       Low
cufflinks 4.332        
cufflinks 0.651        
cufflinks 33.258     High High
cufflinks 15.289     High High
cufflinks 0.464        
cufflinks 0.501        
cufflinks 0.239       Low
cufflinks 0.393        
cufflinks 2.209        
cufflinks 0.35        
cufflinks 10.64       High
cufflinks 1.134        
cufflinks 30.254     High High
cufflinks 40.098     High High
cufflinks 0.65        
cufflinks 12.576     High High
cufflinks 2.853        
cufflinks 0.205       Low
cufflinks 0.441        
cufflinks 0.384        
cufflinks 0.171       Low
cufflinks 3.0        
cufflinks 0.376        
cufflinks 0.683        
cufflinks 28.662     High High
cufflinks 7.423        

0 Strain