Gene : Sobic.001G512800 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR11670//PTHR11670:SF40 - ACONITASE // ACONITATE HYDRATASE 1 Genomic Order:  5393
Name:  ? Sobic.001G512800 Secondary Identifier:  ? PAC:37942141
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Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLYOXYLATE-BYPASS Sorghum bicolor pathologic  
Sbicolor PWY-5464 Sorghum bicolor pathologic  
Sbicolor PWY-561 Sorghum bicolor pathologic  
Sbicolor PWY-5690 Sorghum bicolor pathologic  
Sbicolor PWY-6549 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G512800 0.5kb upstream 0.5kb upstream 8404 true Chr01: 78058534-78066937 Sorghum bicolor
Sobic.001G512800 0.5kb upstream 0.5kb upstream 500 false Chr01: 78058534-78059033 Sorghum bicolor
Sobic.001G512800 0.5kb downstream 0.5kb downstream 8404 true Chr01: 78059034-78067437 Sorghum bicolor
Sobic.001G512800 0.5kb downstream 0.5kb downstream 500 false Chr01: 78066938-78067437 Sorghum bicolor
Sobic.001G512800 1.0kb upstream 1.0kb upstream 8904 true Chr01: 78058034-78066937 Sorghum bicolor
Sobic.001G512800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 78058034-78059033 Sorghum bicolor
Sobic.001G512800 1.0kb downstream 1.0kb downstream 8904 true Chr01: 78059034-78067937 Sorghum bicolor
Sobic.001G512800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 78066938-78067937 Sorghum bicolor
Sobic.001G512800 2.0kb upstream 2.0kb upstream 9904 true Chr01: 78057034-78066937 Sorghum bicolor
Sobic.001G512800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 78057034-78059033 Sorghum bicolor
Sobic.001G512800 2.0kb downstream 2.0kb downstream 9904 true Chr01: 78059034-78068937 Sorghum bicolor
Sobic.001G512800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 78066938-78068937 Sorghum bicolor
Sobic.001G512800 5.0kb upstream 5.0kb upstream 12904 true Chr01: 78054034-78066937 Sorghum bicolor
Sobic.001G512800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 78054034-78059033 Sorghum bicolor
Sobic.001G512800 5.0kb downstream 5.0kb downstream 12904 true Chr01: 78059034-78071937 Sorghum bicolor
Sobic.001G512800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 78066938-78071937 Sorghum bicolor
Sobic.001G512800 10.0kb upstream 10.0kb upstream 17904 true Chr01: 78049034-78066937 Sorghum bicolor
Sobic.001G512800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 78049034-78059033 Sorghum bicolor
Sobic.001G512800 10.0kb downstream 10.0kb downstream 17904 true Chr01: 78059034-78076937 Sorghum bicolor
Sobic.001G512800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 78066938-78076937 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122025860 5273 Angiosperm View MSA
122177032 5267 Panicoideae View MSA
124588210 5269 Grass View MSA
121295930 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.224     High  
cufflinks 17.697     High Low
cufflinks 20.042     High Low
cufflinks 20.737     High Low
cufflinks 59.327     High  
cufflinks 11.603       Low
cufflinks 38.182     High  
cufflinks 36.091     High  
cufflinks 38.38     High  
cufflinks 53.144     High  
cufflinks 97.881     High  
cufflinks 102.656     High  
cufflinks 44.335     High  
cufflinks 170.723     High High
cufflinks 61.007     High  
cufflinks 24.05     High  
cufflinks 37.742     High  
cufflinks 40.992     High  
cufflinks 21.375     High Low
cufflinks 25.661     High  
cufflinks 29.616     High  
cufflinks 143.888     High High
cufflinks 142.584     High High
cufflinks 156.81     High High
cufflinks 10.848     High Low
cufflinks 25.505     High  
cufflinks 67.626     High  
cufflinks 21.579     High Low
cufflinks 56.815     High  
cufflinks 58.79     High  

0 Strain