Gene : Sobic.006G011200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  119
Name:  ? Sobic.006G011200 Secondary Identifier:  ? PAC:37945366
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5173 Sorghum bicolor pathologic  
Sbicolor PWY-5464 Sorghum bicolor pathologic  
Sbicolor PYRUVDEHYD-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G011200 0.5kb upstream 0.5kb upstream 4630 true Chr06: 1601433-1606062 Sorghum bicolor
Sobic.006G011200 0.5kb upstream 0.5kb upstream 500 false Chr06: 1601433-1601932 Sorghum bicolor
Sobic.006G011200 0.5kb downstream 0.5kb downstream 4630 true Chr06: 1601933-1606562 Sorghum bicolor
Sobic.006G011200 0.5kb downstream 0.5kb downstream 500 false Chr06: 1606063-1606562 Sorghum bicolor
Sobic.006G011200 1.0kb upstream 1.0kb upstream 5130 true Chr06: 1600933-1606062 Sorghum bicolor
Sobic.006G011200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 1600933-1601932 Sorghum bicolor
Sobic.006G011200 1.0kb downstream 1.0kb downstream 5130 true Chr06: 1601933-1607062 Sorghum bicolor
Sobic.006G011200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 1606063-1607062 Sorghum bicolor
Sobic.006G011200 2.0kb upstream 2.0kb upstream 6130 true Chr06: 1599933-1606062 Sorghum bicolor
Sobic.006G011200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 1599933-1601932 Sorghum bicolor
Sobic.006G011200 2.0kb downstream 2.0kb downstream 6130 true Chr06: 1601933-1608062 Sorghum bicolor
Sobic.006G011200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 1606063-1608062 Sorghum bicolor
Sobic.006G011200 5.0kb upstream 5.0kb upstream 9130 true Chr06: 1596933-1606062 Sorghum bicolor
Sobic.006G011200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 1596933-1601932 Sorghum bicolor
Sobic.006G011200 5.0kb downstream 5.0kb downstream 9130 true Chr06: 1601933-1611062 Sorghum bicolor
Sobic.006G011200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 1606063-1611062 Sorghum bicolor
Sobic.006G011200 10.0kb upstream 10.0kb upstream 14130 true Chr06: 1591933-1606062 Sorghum bicolor
Sobic.006G011200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 1591933-1601932 Sorghum bicolor
Sobic.006G011200 10.0kb downstream 10.0kb downstream 14130 true Chr06: 1601933-1616062 Sorghum bicolor
Sobic.006G011200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 1606063-1616062 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181161 5267 Panicoideae View MSA
124579734 5269 Grass View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.987     High  
cufflinks 15.356     High Low
cufflinks 30.943     High  
cufflinks 31.81     High  
cufflinks 38.813     High  
cufflinks 25.276     High  
cufflinks 53.513     High  
cufflinks 27.306     High  
cufflinks 9.546       Low
cufflinks 14.585     High Low
cufflinks 42.0     High  
cufflinks 56.0     High  
cufflinks 12.6     High Low
cufflinks 43.503     High  
cufflinks 30.014     High  
cufflinks 45.333     High  
cufflinks 52.607     High  
cufflinks 58.961     High  
cufflinks 41.874     High  
cufflinks 46.577     High  
cufflinks 42.575     High  
cufflinks 79.307     High High
cufflinks 55.098     High  
cufflinks 55.043     High  
cufflinks 8.414       Low
cufflinks 12.957     High Low
cufflinks 96.911     High High
cufflinks 5.54       Low
cufflinks 67.199     High High
cufflinks 52.24     High  

0 Strain