Gene : Sobic.001G509200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10543//PTHR10543:SF37 - BETA-CAROTENE DIOXYGENASE // CAROTENOID 9,10(9',10')-CLEAVAGE DIOXYGENASE 1 Genomic Order:  5355
Name:  ? Sobic.001G509200 Secondary Identifier:  ? PAC:37940187
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G509200 0.5kb upstream 0.5kb upstream 7127 true Chr01: 77716178-77723304 Sorghum bicolor
Sobic.001G509200 0.5kb upstream 0.5kb upstream 500 false Chr01: 77716178-77716677 Sorghum bicolor
Sobic.001G509200 0.5kb downstream 0.5kb downstream 7127 true Chr01: 77716678-77723804 Sorghum bicolor
Sobic.001G509200 0.5kb downstream 0.5kb downstream 500 false Chr01: 77723305-77723804 Sorghum bicolor
Sobic.001G509200 1.0kb upstream 1.0kb upstream 7627 true Chr01: 77715678-77723304 Sorghum bicolor
Sobic.001G509200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 77715678-77716677 Sorghum bicolor
Sobic.001G509200 1.0kb downstream 1.0kb downstream 7627 true Chr01: 77716678-77724304 Sorghum bicolor
Sobic.001G509200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 77723305-77724304 Sorghum bicolor
Sobic.001G509200 2.0kb upstream 2.0kb upstream 8627 true Chr01: 77714678-77723304 Sorghum bicolor
Sobic.001G509200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 77714678-77716677 Sorghum bicolor
Sobic.001G509200 2.0kb downstream 2.0kb downstream 8627 true Chr01: 77716678-77725304 Sorghum bicolor
Sobic.001G509200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 77723305-77725304 Sorghum bicolor
Sobic.001G509200 5.0kb upstream 5.0kb upstream 11627 true Chr01: 77711678-77723304 Sorghum bicolor
Sobic.001G509200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 77711678-77716677 Sorghum bicolor
Sobic.001G509200 5.0kb downstream 5.0kb downstream 11627 true Chr01: 77716678-77728304 Sorghum bicolor
Sobic.001G509200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 77723305-77728304 Sorghum bicolor
Sobic.001G509200 10.0kb upstream 10.0kb upstream 16627 true Chr01: 77706678-77723304 Sorghum bicolor
Sobic.001G509200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 77706678-77716677 Sorghum bicolor
Sobic.001G509200 10.0kb downstream 10.0kb downstream 16627 true Chr01: 77716678-77733304 Sorghum bicolor
Sobic.001G509200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 77723305-77733304 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177138 5267 Panicoideae View MSA
124583262 5269 Grass View MSA
122045403 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.328       Low
cufflinks 134.269     High High
cufflinks 106.684     High High
cufflinks 85.642     High High
cufflinks 11.36        
cufflinks 55.224     High  
cufflinks 56.086     High  
cufflinks 86.637     High High
cufflinks 43.413     High  
cufflinks 45.784     High  
cufflinks 14.952     High  
cufflinks 24.922     High  
cufflinks 41.678     High  
cufflinks 8.087       Low
cufflinks 37.451     High  
cufflinks 114.781     High High
cufflinks 60.374     High  
cufflinks 57.645     High  
cufflinks 83.239     High High
cufflinks 80.469     High High
cufflinks 12.938        
cufflinks 9.283       Low
cufflinks 21.159     High  
cufflinks 18.088     High  
cufflinks 96.259     High High
cufflinks 137.114     High High
cufflinks 32.353     High  
cufflinks 5.947       Low
cufflinks 36.658     High  
cufflinks 28.67     High  

0 Strain