Gene : Sobic.001G496300 S. bicolor v3.1.1
Defline:  (1 of 3) 1.13.11.53 - Acireductone dioxygenase (Ni(2+)-requiring) / E-2 Genomic Order:  5212
Name:  ? Sobic.001G496300 Secondary Identifier:  ? PAC:37939142
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-4361 Sorghum bicolor pathologic  
Sbicolor PWY-5389 Sorghum bicolor pathologic  
Sbicolor PWY-7270 Sorghum bicolor pathologic  
Sbicolor PWY-7528 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G496300 0.5kb upstream 0.5kb upstream 3036 true Chr01: 76617457-76620492 Sorghum bicolor
Sobic.001G496300 0.5kb upstream 0.5kb upstream 500 false Chr01: 76619993-76620492 Sorghum bicolor
Sobic.001G496300 0.5kb downstream 0.5kb downstream 3036 true Chr01: 76616957-76619992 Sorghum bicolor
Sobic.001G496300 0.5kb downstream 0.5kb downstream 500 false Chr01: 76616957-76617456 Sorghum bicolor
Sobic.001G496300 1.0kb upstream 1.0kb upstream 3536 true Chr01: 76617457-76620992 Sorghum bicolor
Sobic.001G496300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 76619993-76620992 Sorghum bicolor
Sobic.001G496300 1.0kb downstream 1.0kb downstream 3536 true Chr01: 76616457-76619992 Sorghum bicolor
Sobic.001G496300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 76616457-76617456 Sorghum bicolor
Sobic.001G496300 2.0kb upstream 2.0kb upstream 4536 true Chr01: 76617457-76621992 Sorghum bicolor
Sobic.001G496300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 76619993-76621992 Sorghum bicolor
Sobic.001G496300 2.0kb downstream 2.0kb downstream 4536 true Chr01: 76615457-76619992 Sorghum bicolor
Sobic.001G496300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 76615457-76617456 Sorghum bicolor
Sobic.001G496300 5.0kb upstream 5.0kb upstream 7536 true Chr01: 76617457-76624992 Sorghum bicolor
Sobic.001G496300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 76619993-76624992 Sorghum bicolor
Sobic.001G496300 5.0kb downstream 5.0kb downstream 7536 true Chr01: 76612457-76619992 Sorghum bicolor
Sobic.001G496300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 76612457-76617456 Sorghum bicolor
Sobic.001G496300 10.0kb upstream 10.0kb upstream 12536 true Chr01: 76617457-76629992 Sorghum bicolor
Sobic.001G496300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 76619993-76629992 Sorghum bicolor
Sobic.001G496300 10.0kb downstream 10.0kb downstream 12536 true Chr01: 76607457-76619992 Sorghum bicolor
Sobic.001G496300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 76607457-76617456 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175571 5267 Panicoideae View MSA
124587161 5269 Grass View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.832     High  
cufflinks 16.788     High  
cufflinks 17.522     High  
cufflinks 22.671     High  
cufflinks 11.091        
cufflinks 17.124     High  
cufflinks 12.334     High  
cufflinks 7.438        
cufflinks 47.941     High High
cufflinks 68.43     High High
cufflinks 6.312       Low
cufflinks 6.285       Low
cufflinks 28.335     High High
cufflinks 4.356       Low
cufflinks 17.198     High  
cufflinks 15.652     High  
cufflinks 12.404     High  
cufflinks 11.654     High  
cufflinks 10.223        
cufflinks 18.492     High  
cufflinks 30.573     High High
cufflinks 5.464       Low
cufflinks 5.765       Low
cufflinks 5.456       Low
cufflinks 20.063     High  
cufflinks 13.55     High  
cufflinks 6.214       Low
cufflinks 25.425     High High
cufflinks 6.088       Low
cufflinks 12.989     High  

0 Strain