Gene : Sobic.006G019100 S. bicolor v3.1.1
Defline:  (1 of 16) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  203
Name:  ? Sobic.006G019100 Secondary Identifier:  ? PAC:37946214
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G019100 0.5kb upstream 0.5kb upstream 5456 true Chr06: 3259423-3264878 Sorghum bicolor
Sobic.006G019100 0.5kb upstream 0.5kb upstream 500 false Chr06: 3259423-3259922 Sorghum bicolor
Sobic.006G019100 0.5kb downstream 0.5kb downstream 5456 true Chr06: 3259923-3265378 Sorghum bicolor
Sobic.006G019100 0.5kb downstream 0.5kb downstream 500 false Chr06: 3264879-3265378 Sorghum bicolor
Sobic.006G019100 1.0kb upstream 1.0kb upstream 5956 true Chr06: 3258923-3264878 Sorghum bicolor
Sobic.006G019100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 3258923-3259922 Sorghum bicolor
Sobic.006G019100 1.0kb downstream 1.0kb downstream 5956 true Chr06: 3259923-3265878 Sorghum bicolor
Sobic.006G019100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 3264879-3265878 Sorghum bicolor
Sobic.006G019100 2.0kb upstream 2.0kb upstream 6956 true Chr06: 3257923-3264878 Sorghum bicolor
Sobic.006G019100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 3257923-3259922 Sorghum bicolor
Sobic.006G019100 2.0kb downstream 2.0kb downstream 6956 true Chr06: 3259923-3266878 Sorghum bicolor
Sobic.006G019100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 3264879-3266878 Sorghum bicolor
Sobic.006G019100 5.0kb upstream 5.0kb upstream 9956 true Chr06: 3254923-3264878 Sorghum bicolor
Sobic.006G019100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 3254923-3259922 Sorghum bicolor
Sobic.006G019100 5.0kb downstream 5.0kb downstream 9956 true Chr06: 3259923-3269878 Sorghum bicolor
Sobic.006G019100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 3264879-3269878 Sorghum bicolor
Sobic.006G019100 10.0kb upstream 10.0kb upstream 14956 true Chr06: 3249923-3264878 Sorghum bicolor
Sobic.006G019100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 3249923-3259922 Sorghum bicolor
Sobic.006G019100 10.0kb downstream 10.0kb downstream 14956 true Chr06: 3259923-3274878 Sorghum bicolor
Sobic.006G019100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 3264879-3274878 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995681 5273 Angiosperm View MSA
122197520 5267 Panicoideae View MSA
124589230 5269 Grass View MSA
121265867 5274 Embryophyte View MSA
123304229 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.978        
cufflinks 0.679       Low
cufflinks 1.903        
cufflinks 2.807        
cufflinks 5.597       High
cufflinks 4.111        
cufflinks 3.413        
cufflinks 1.656        
cufflinks 3.332        
cufflinks 3.501        
cufflinks 1.823        
cufflinks 2.792        
cufflinks 2.455        
cufflinks 2.549        
cufflinks 4.039        
cufflinks 1.598       Low
cufflinks 3.22        
cufflinks 2.948        
cufflinks 1.766        
cufflinks 3.96        
cufflinks 14.44     High High
cufflinks 3.693        
cufflinks 2.551        
cufflinks 2.544        
cufflinks 1.374       Low
cufflinks 0.596       Low
cufflinks 2.062        
cufflinks 7.799       High
cufflinks 2.304        
cufflinks 4.948        

0 Strain