Gene : Sobic.006G019000 S. bicolor v3.1.1
Defline:  (1 of 16) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  202
Name:  ? Sobic.006G019000 Secondary Identifier:  ? PAC:37945775
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0 Pathways

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G019000 0.5kb upstream 0.5kb upstream 2288 true Chr06: 3255983-3258270 Sorghum bicolor
Sobic.006G019000 0.5kb upstream 0.5kb upstream 500 false Chr06: 3257771-3258270 Sorghum bicolor
Sobic.006G019000 0.5kb downstream 0.5kb downstream 2288 true Chr06: 3255483-3257770 Sorghum bicolor
Sobic.006G019000 0.5kb downstream 0.5kb downstream 500 false Chr06: 3255483-3255982 Sorghum bicolor
Sobic.006G019000 1.0kb upstream 1.0kb upstream 2788 true Chr06: 3255983-3258770 Sorghum bicolor
Sobic.006G019000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 3257771-3258770 Sorghum bicolor
Sobic.006G019000 1.0kb downstream 1.0kb downstream 2788 true Chr06: 3254983-3257770 Sorghum bicolor
Sobic.006G019000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 3254983-3255982 Sorghum bicolor
Sobic.006G019000 2.0kb upstream 2.0kb upstream 3788 true Chr06: 3255983-3259770 Sorghum bicolor
Sobic.006G019000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 3257771-3259770 Sorghum bicolor
Sobic.006G019000 2.0kb downstream 2.0kb downstream 3788 true Chr06: 3253983-3257770 Sorghum bicolor
Sobic.006G019000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 3253983-3255982 Sorghum bicolor
Sobic.006G019000 5.0kb upstream 5.0kb upstream 6788 true Chr06: 3255983-3262770 Sorghum bicolor
Sobic.006G019000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 3257771-3262770 Sorghum bicolor
Sobic.006G019000 5.0kb downstream 5.0kb downstream 6788 true Chr06: 3250983-3257770 Sorghum bicolor
Sobic.006G019000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 3250983-3255982 Sorghum bicolor
Sobic.006G019000 10.0kb upstream 10.0kb upstream 11788 true Chr06: 3255983-3267770 Sorghum bicolor
Sobic.006G019000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 3257771-3267770 Sorghum bicolor
Sobic.006G019000 10.0kb downstream 10.0kb downstream 11788 true Chr06: 3245983-3257770 Sorghum bicolor
Sobic.006G019000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 3245983-3255982 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995681 5273 Angiosperm View MSA
122197520 5267 Panicoideae View MSA
124589230 5269 Grass View MSA
121265867 5274 Embryophyte View MSA
123304229 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low  
cufflinks 0.607       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain