Gene : Sobic.005G190800 S. bicolor v3.1.1
Defline:  (1 of 3) K05928 - tocopherol O-methyltransferase (E2.1.1.95) Genomic Order:  2005
Name:  ? Sobic.005G190800 Secondary Identifier:  ? PAC:37925684
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-1422 Sorghum bicolor pathologic  
Sbicolor PWY-7436 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G190800 0.5kb upstream 0.5kb upstream 8569 true Chr05: 67470998-67479566 Sorghum bicolor
Sobic.005G190800 0.5kb upstream 0.5kb upstream 500 false Chr05: 67470998-67471497 Sorghum bicolor
Sobic.005G190800 0.5kb downstream 0.5kb downstream 8569 true Chr05: 67471498-67480066 Sorghum bicolor
Sobic.005G190800 0.5kb downstream 0.5kb downstream 500 false Chr05: 67479567-67480066 Sorghum bicolor
Sobic.005G190800 1.0kb upstream 1.0kb upstream 9069 true Chr05: 67470498-67479566 Sorghum bicolor
Sobic.005G190800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 67470498-67471497 Sorghum bicolor
Sobic.005G190800 1.0kb downstream 1.0kb downstream 9069 true Chr05: 67471498-67480566 Sorghum bicolor
Sobic.005G190800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 67479567-67480566 Sorghum bicolor
Sobic.005G190800 2.0kb upstream 2.0kb upstream 10069 true Chr05: 67469498-67479566 Sorghum bicolor
Sobic.005G190800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 67469498-67471497 Sorghum bicolor
Sobic.005G190800 2.0kb downstream 2.0kb downstream 10069 true Chr05: 67471498-67481566 Sorghum bicolor
Sobic.005G190800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 67479567-67481566 Sorghum bicolor
Sobic.005G190800 5.0kb upstream 5.0kb upstream 13069 true Chr05: 67466498-67479566 Sorghum bicolor
Sobic.005G190800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 67466498-67471497 Sorghum bicolor
Sobic.005G190800 5.0kb downstream 5.0kb downstream 13069 true Chr05: 67471498-67484566 Sorghum bicolor
Sobic.005G190800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 67479567-67484566 Sorghum bicolor
Sobic.005G190800 10.0kb upstream 10.0kb upstream 18069 true Chr05: 67461498-67479566 Sorghum bicolor
Sobic.005G190800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 67461498-67471497 Sorghum bicolor
Sobic.005G190800 10.0kb downstream 10.0kb downstream 18069 true Chr05: 67471498-67489566 Sorghum bicolor
Sobic.005G190800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 67479567-67489566 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182929 5267 Panicoideae View MSA
124569440 5269 Grass View MSA
122044817 5273 Angiosperm View MSA
121347406 5274 Embryophyte View MSA
123427925 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.005     Low  
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.44       High
cufflinks 5.608       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.007     Low  
cufflinks 0.004     Low  
cufflinks 0.005     Low  
cufflinks 0.12        
cufflinks 0.004     Low  
cufflinks 0.725       High
cufflinks 0.52       High
cufflinks 0.028     Low  
cufflinks 0.811       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.173        
cufflinks 0.168        
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.968       High
cufflinks 0.021     Low  

0 Strain