Gene : Sobic.002G062500 S. bicolor v3.1.1
Defline:  (1 of 1) 1.2.1.27 - Methylmalonate-semialdehyde dehydrogenase (CoA acylating) / MSDH Genomic Order:  642
Name:  ? Sobic.002G062500 Secondary Identifier:  ? PAC:37953155
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor VALDEG-PWY Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G062500 0.5kb upstream 0.5kb upstream 8014 true Chr02: 6035346-6043359 Sorghum bicolor
Sobic.002G062500 0.5kb upstream 0.5kb upstream 500 false Chr02: 6035346-6035845 Sorghum bicolor
Sobic.002G062500 0.5kb downstream 0.5kb downstream 8014 true Chr02: 6035846-6043859 Sorghum bicolor
Sobic.002G062500 0.5kb downstream 0.5kb downstream 500 false Chr02: 6043360-6043859 Sorghum bicolor
Sobic.002G062500 1.0kb upstream 1.0kb upstream 8514 true Chr02: 6034846-6043359 Sorghum bicolor
Sobic.002G062500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 6034846-6035845 Sorghum bicolor
Sobic.002G062500 1.0kb downstream 1.0kb downstream 8514 true Chr02: 6035846-6044359 Sorghum bicolor
Sobic.002G062500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 6043360-6044359 Sorghum bicolor
Sobic.002G062500 2.0kb upstream 2.0kb upstream 9514 true Chr02: 6033846-6043359 Sorghum bicolor
Sobic.002G062500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 6033846-6035845 Sorghum bicolor
Sobic.002G062500 2.0kb downstream 2.0kb downstream 9514 true Chr02: 6035846-6045359 Sorghum bicolor
Sobic.002G062500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 6043360-6045359 Sorghum bicolor
Sobic.002G062500 5.0kb upstream 5.0kb upstream 12514 true Chr02: 6030846-6043359 Sorghum bicolor
Sobic.002G062500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 6030846-6035845 Sorghum bicolor
Sobic.002G062500 5.0kb downstream 5.0kb downstream 12514 true Chr02: 6035846-6048359 Sorghum bicolor
Sobic.002G062500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 6043360-6048359 Sorghum bicolor
Sobic.002G062500 10.0kb upstream 10.0kb upstream 17514 true Chr02: 6025846-6043359 Sorghum bicolor
Sobic.002G062500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 6025846-6035845 Sorghum bicolor
Sobic.002G062500 10.0kb downstream 10.0kb downstream 17514 true Chr02: 6035846-6053359 Sorghum bicolor
Sobic.002G062500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 6043360-6053359 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191677 5267 Panicoideae View MSA
124575306 5269 Grass View MSA
122044147 5273 Angiosperm View MSA
121345604 5274 Embryophyte View MSA
123424668 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.436        
cufflinks 0.803       Low
cufflinks 2.23       Low
cufflinks 4.235        
cufflinks 19.389     High  
cufflinks 5.236        
cufflinks 7.686        
cufflinks 4.235        
cufflinks 10.294        
cufflinks 12.098     High  
cufflinks 22.024     High  
cufflinks 16.15     High  
cufflinks 10.229        
cufflinks 21.445     High  
cufflinks 7.721        
cufflinks 1.342       Low
cufflinks 7.892        
cufflinks 8.82        
cufflinks 3.289       Low
cufflinks 6.258        
cufflinks 19.574     High  
cufflinks 22.783     High High
cufflinks 20.664     High  
cufflinks 19.104     High  
cufflinks 0.819       Low
cufflinks 0.897       Low
cufflinks 15.399     High  
cufflinks 20.821     High  
cufflinks 11.102        
cufflinks 11.408        

0 Strain