Gene : Sobic.002G064500 S. bicolor v3.1.1
Defline:  (1 of 4) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  663
Name:  ? Sobic.002G064500 Secondary Identifier:  ? PAC:37952814
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7560 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G064500 0.5kb upstream 0.5kb upstream 3885 true Chr02: 6275156-6279040 Sorghum bicolor
Sobic.002G064500 0.5kb upstream 0.5kb upstream 500 false Chr02: 6275156-6275655 Sorghum bicolor
Sobic.002G064500 0.5kb downstream 0.5kb downstream 3885 true Chr02: 6275656-6279540 Sorghum bicolor
Sobic.002G064500 0.5kb downstream 0.5kb downstream 500 false Chr02: 6279041-6279540 Sorghum bicolor
Sobic.002G064500 1.0kb upstream 1.0kb upstream 4385 true Chr02: 6274656-6279040 Sorghum bicolor
Sobic.002G064500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 6274656-6275655 Sorghum bicolor
Sobic.002G064500 1.0kb downstream 1.0kb downstream 4385 true Chr02: 6275656-6280040 Sorghum bicolor
Sobic.002G064500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 6279041-6280040 Sorghum bicolor
Sobic.002G064500 2.0kb upstream 2.0kb upstream 5385 true Chr02: 6273656-6279040 Sorghum bicolor
Sobic.002G064500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 6273656-6275655 Sorghum bicolor
Sobic.002G064500 2.0kb downstream 2.0kb downstream 5385 true Chr02: 6275656-6281040 Sorghum bicolor
Sobic.002G064500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 6279041-6281040 Sorghum bicolor
Sobic.002G064500 5.0kb upstream 5.0kb upstream 8385 true Chr02: 6270656-6279040 Sorghum bicolor
Sobic.002G064500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 6270656-6275655 Sorghum bicolor
Sobic.002G064500 5.0kb downstream 5.0kb downstream 8385 true Chr02: 6275656-6284040 Sorghum bicolor
Sobic.002G064500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 6279041-6284040 Sorghum bicolor
Sobic.002G064500 10.0kb upstream 10.0kb upstream 13385 true Chr02: 6265656-6279040 Sorghum bicolor
Sobic.002G064500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 6265656-6275655 Sorghum bicolor
Sobic.002G064500 10.0kb downstream 10.0kb downstream 13385 true Chr02: 6275656-6289040 Sorghum bicolor
Sobic.002G064500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 6279041-6289040 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180882 5267 Panicoideae View MSA
124583726 5269 Grass View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.11       Low
cufflinks 6.329     High  
cufflinks 40.224     High High
cufflinks 4.241        
cufflinks 0.823        
cufflinks 2.467        
cufflinks 1.374        
cufflinks 1.319        
cufflinks 0.056     Low Low
cufflinks 0.504        
cufflinks 12.998     High  
cufflinks 17.46     High  
cufflinks 0.239       Low
cufflinks 2.532        
cufflinks 4.137        
cufflinks 10.393     High  
cufflinks 0.54        
cufflinks 1.321        
cufflinks 125.819     High High
cufflinks 1.076        
cufflinks 2.293        
cufflinks 6.794        
cufflinks 10.302        
cufflinks 8.764        
cufflinks 0.2       Low
cufflinks 0.493        
cufflinks 31.198     High High
cufflinks 0.04     Low Low
cufflinks 30.156     High High
cufflinks 3.261        

0 Strain