Gene : Sobic.002G054200 S. bicolor v3.1.1
Defline:  (1 of 18) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  558
Name:  ? Sobic.002G054200 Secondary Identifier:  ? PAC:37951122
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G054200 0.5kb upstream 0.5kb upstream 4274 true Chr02: 5171437-5175710 Sorghum bicolor
Sobic.002G054200 0.5kb upstream 0.5kb upstream 500 false Chr02: 5175211-5175710 Sorghum bicolor
Sobic.002G054200 0.5kb downstream 0.5kb downstream 4274 true Chr02: 5170937-5175210 Sorghum bicolor
Sobic.002G054200 0.5kb downstream 0.5kb downstream 500 false Chr02: 5170937-5171436 Sorghum bicolor
Sobic.002G054200 1.0kb upstream 1.0kb upstream 4774 true Chr02: 5171437-5176210 Sorghum bicolor
Sobic.002G054200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 5175211-5176210 Sorghum bicolor
Sobic.002G054200 1.0kb downstream 1.0kb downstream 4774 true Chr02: 5170437-5175210 Sorghum bicolor
Sobic.002G054200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 5170437-5171436 Sorghum bicolor
Sobic.002G054200 2.0kb upstream 2.0kb upstream 5774 true Chr02: 5171437-5177210 Sorghum bicolor
Sobic.002G054200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 5175211-5177210 Sorghum bicolor
Sobic.002G054200 2.0kb downstream 2.0kb downstream 5774 true Chr02: 5169437-5175210 Sorghum bicolor
Sobic.002G054200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 5169437-5171436 Sorghum bicolor
Sobic.002G054200 5.0kb upstream 5.0kb upstream 8774 true Chr02: 5171437-5180210 Sorghum bicolor
Sobic.002G054200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 5175211-5180210 Sorghum bicolor
Sobic.002G054200 5.0kb downstream 5.0kb downstream 8774 true Chr02: 5166437-5175210 Sorghum bicolor
Sobic.002G054200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 5166437-5171436 Sorghum bicolor
Sobic.002G054200 10.0kb upstream 10.0kb upstream 13774 true Chr02: 5171437-5185210 Sorghum bicolor
Sobic.002G054200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 5175211-5185210 Sorghum bicolor
Sobic.002G054200 10.0kb downstream 10.0kb downstream 13774 true Chr02: 5161437-5175210 Sorghum bicolor
Sobic.002G054200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 5161437-5171436 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122173194 5267 Panicoideae View MSA
124463968 5269 Grass View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.617        
cufflinks 0.477       Low
cufflinks 0.835        
cufflinks 0.534       Low
cufflinks 2.296       High
cufflinks 0.775        
cufflinks 1.35        
cufflinks 0.547       Low
cufflinks 1.312        
cufflinks 1.501        
cufflinks 0.794        
cufflinks 1.038        
cufflinks 0.959        
cufflinks 1.02        
cufflinks 1.625        
cufflinks 0.54       Low
cufflinks 1.17        
cufflinks 1.407        
cufflinks 0.66        
cufflinks 1.294        
cufflinks 4.727       High
cufflinks 0.889        
cufflinks 1.031        
cufflinks 1.089        
cufflinks 0.397       Low
cufflinks 0.515       Low
cufflinks 0.929        
cufflinks 0.608        
cufflinks 0.926        
cufflinks 1.606        

0 Strain