Gene : Sobic.002G043600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  449
Name:  ? Sobic.002G043600 Secondary Identifier:  ? PAC:37951059
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G043600 0.5kb upstream 0.5kb upstream 4956 true Chr02: 4141960-4146915 Sorghum bicolor
Sobic.002G043600 0.5kb upstream 0.5kb upstream 500 false Chr02: 4141960-4142459 Sorghum bicolor
Sobic.002G043600 0.5kb downstream 0.5kb downstream 4956 true Chr02: 4142460-4147415 Sorghum bicolor
Sobic.002G043600 0.5kb downstream 0.5kb downstream 500 false Chr02: 4146916-4147415 Sorghum bicolor
Sobic.002G043600 1.0kb upstream 1.0kb upstream 5456 true Chr02: 4141460-4146915 Sorghum bicolor
Sobic.002G043600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4141460-4142459 Sorghum bicolor
Sobic.002G043600 1.0kb downstream 1.0kb downstream 5456 true Chr02: 4142460-4147915 Sorghum bicolor
Sobic.002G043600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4146916-4147915 Sorghum bicolor
Sobic.002G043600 2.0kb upstream 2.0kb upstream 6456 true Chr02: 4140460-4146915 Sorghum bicolor
Sobic.002G043600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4140460-4142459 Sorghum bicolor
Sobic.002G043600 2.0kb downstream 2.0kb downstream 6456 true Chr02: 4142460-4148915 Sorghum bicolor
Sobic.002G043600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4146916-4148915 Sorghum bicolor
Sobic.002G043600 5.0kb upstream 5.0kb upstream 9456 true Chr02: 4137460-4146915 Sorghum bicolor
Sobic.002G043600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4137460-4142459 Sorghum bicolor
Sobic.002G043600 5.0kb downstream 5.0kb downstream 9456 true Chr02: 4142460-4151915 Sorghum bicolor
Sobic.002G043600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4146916-4151915 Sorghum bicolor
Sobic.002G043600 10.0kb upstream 10.0kb upstream 14456 true Chr02: 4132460-4146915 Sorghum bicolor
Sobic.002G043600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4132460-4142459 Sorghum bicolor
Sobic.002G043600 10.0kb downstream 10.0kb downstream 14456 true Chr02: 4142460-4156915 Sorghum bicolor
Sobic.002G043600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4146916-4156915 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179040 5267 Panicoideae View MSA
124581859 5269 Grass View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.257        
cufflinks 9.347     High  
cufflinks 13.188     High High
cufflinks 10.679        
cufflinks 6.245        
cufflinks 7.288        
cufflinks 16.274     High High
cufflinks 15.227     High High
cufflinks 6.892        
cufflinks 6.549        
cufflinks 5.591        
cufflinks 6.671        
cufflinks 5.44        
cufflinks 5.647        
cufflinks 6.187        
cufflinks 10.738     High  
cufflinks 16.447     High High
cufflinks 19.873     High High
cufflinks 9.997        
cufflinks 13.109     High High
cufflinks 8.272        
cufflinks 6.026        
cufflinks 7.418        
cufflinks 7.358        
cufflinks 7.139        
cufflinks 8.419     High  
cufflinks 5.404        
cufflinks 5.462        
cufflinks 31.029     High High
cufflinks 7.723        

0 Strain