Gene : Sobic.002G041300 S. bicolor v3.1.1
Defline:  (1 of 9) 3.4.19.12//3.4.22.69 - Ubiquitinyl hydrolase 1 / Ubiquitin thiolesterase // SARS coronavirus main proteinase / Severe acute respiratory syndrome coronavirus main protease Genomic Order:  425
Name:  ? Sobic.002G041300 Secondary Identifier:  ? PAC:37952713
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G041300 0.5kb upstream 0.5kb upstream 3697 true Chr02: 3977209-3980905 Sorghum bicolor
Sobic.002G041300 0.5kb upstream 0.5kb upstream 500 false Chr02: 3980406-3980905 Sorghum bicolor
Sobic.002G041300 0.5kb downstream 0.5kb downstream 3697 true Chr02: 3976709-3980405 Sorghum bicolor
Sobic.002G041300 0.5kb downstream 0.5kb downstream 500 false Chr02: 3976709-3977208 Sorghum bicolor
Sobic.002G041300 1.0kb upstream 1.0kb upstream 4197 true Chr02: 3977209-3981405 Sorghum bicolor
Sobic.002G041300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3980406-3981405 Sorghum bicolor
Sobic.002G041300 1.0kb downstream 1.0kb downstream 4197 true Chr02: 3976209-3980405 Sorghum bicolor
Sobic.002G041300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3976209-3977208 Sorghum bicolor
Sobic.002G041300 2.0kb upstream 2.0kb upstream 5197 true Chr02: 3977209-3982405 Sorghum bicolor
Sobic.002G041300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3980406-3982405 Sorghum bicolor
Sobic.002G041300 2.0kb downstream 2.0kb downstream 5197 true Chr02: 3975209-3980405 Sorghum bicolor
Sobic.002G041300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3975209-3977208 Sorghum bicolor
Sobic.002G041300 5.0kb upstream 5.0kb upstream 8197 true Chr02: 3977209-3985405 Sorghum bicolor
Sobic.002G041300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3980406-3985405 Sorghum bicolor
Sobic.002G041300 5.0kb downstream 5.0kb downstream 8197 true Chr02: 3972209-3980405 Sorghum bicolor
Sobic.002G041300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3972209-3977208 Sorghum bicolor
Sobic.002G041300 10.0kb upstream 10.0kb upstream 13197 true Chr02: 3977209-3990405 Sorghum bicolor
Sobic.002G041300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3980406-3990405 Sorghum bicolor
Sobic.002G041300 10.0kb downstream 10.0kb downstream 13197 true Chr02: 3967209-3980405 Sorghum bicolor
Sobic.002G041300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3967209-3977208 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995367 5273 Angiosperm View MSA
122173217 5267 Panicoideae View MSA
124588011 5269 Grass View MSA
121265561 5274 Embryophyte View MSA
123303941 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.916       High
cufflinks 0.462       Low
cufflinks 1.156        
cufflinks 2.405       High
cufflinks 1.164        
cufflinks 1.456        
cufflinks 0.769        
cufflinks 0.256       Low
cufflinks 1.488        
cufflinks 1.591        
cufflinks 0.694        
cufflinks 0.892        
cufflinks 0.846        
cufflinks 1.321        
cufflinks 1.993       High
cufflinks 0.687        
cufflinks 0.784        
cufflinks 0.7        
cufflinks 1.512        
cufflinks 1.05        
cufflinks 1.069        
cufflinks 0.411       Low
cufflinks 0.635        
cufflinks 0.454       Low
cufflinks 0.496       Low
cufflinks 0.46       Low
cufflinks 1.584        
cufflinks 3.472       High
cufflinks 0.562        
cufflinks 2.738       High

0 Strain