Gene : Sobic.002G042000 S. bicolor v3.1.1
Defline:  (1 of 5) PTHR23024//PTHR23024:SF162 - MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES // SUBFAMILY NOT NAMED Genomic Order:  433
Name:  ? Sobic.002G042000 Secondary Identifier:  ? PAC:37950097
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6303 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G042000 0.5kb upstream 0.5kb upstream 2304 true Chr02: 4013436-4015739 Sorghum bicolor
Sobic.002G042000 0.5kb upstream 0.5kb upstream 500 false Chr02: 4013436-4013935 Sorghum bicolor
Sobic.002G042000 0.5kb downstream 0.5kb downstream 2304 true Chr02: 4013936-4016239 Sorghum bicolor
Sobic.002G042000 0.5kb downstream 0.5kb downstream 500 false Chr02: 4015740-4016239 Sorghum bicolor
Sobic.002G042000 1.0kb upstream 1.0kb upstream 2804 true Chr02: 4012936-4015739 Sorghum bicolor
Sobic.002G042000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4012936-4013935 Sorghum bicolor
Sobic.002G042000 1.0kb downstream 1.0kb downstream 2804 true Chr02: 4013936-4016739 Sorghum bicolor
Sobic.002G042000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4015740-4016739 Sorghum bicolor
Sobic.002G042000 2.0kb upstream 2.0kb upstream 3804 true Chr02: 4011936-4015739 Sorghum bicolor
Sobic.002G042000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4011936-4013935 Sorghum bicolor
Sobic.002G042000 2.0kb downstream 2.0kb downstream 3804 true Chr02: 4013936-4017739 Sorghum bicolor
Sobic.002G042000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4015740-4017739 Sorghum bicolor
Sobic.002G042000 5.0kb upstream 5.0kb upstream 6804 true Chr02: 4008936-4015739 Sorghum bicolor
Sobic.002G042000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4008936-4013935 Sorghum bicolor
Sobic.002G042000 5.0kb downstream 5.0kb downstream 6804 true Chr02: 4013936-4020739 Sorghum bicolor
Sobic.002G042000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4015740-4020739 Sorghum bicolor
Sobic.002G042000 10.0kb upstream 10.0kb upstream 11804 true Chr02: 4003936-4015739 Sorghum bicolor
Sobic.002G042000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4003936-4013935 Sorghum bicolor
Sobic.002G042000 10.0kb downstream 10.0kb downstream 11804 true Chr02: 4013936-4025739 Sorghum bicolor
Sobic.002G042000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4015740-4025739 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177119 5267 Panicoideae View MSA
124584166 5269 Grass View MSA
122047300 5273 Angiosperm View MSA
123428915 5275 Viridiplantae View MSA
121350136 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.044       Low
cufflinks 1.667        
cufflinks 1.577        
cufflinks 0.863        
cufflinks 0.011     Low Low
cufflinks 0.095     Low  
cufflinks 0.161        
cufflinks 0.269        
cufflinks 0.13        
cufflinks 2.199       High
cufflinks 0.563        
cufflinks 0.307        
cufflinks 1.471        
cufflinks 0.016     Low Low
cufflinks 2.082       High
cufflinks 0.371        
cufflinks 0.058     Low Low
cufflinks 1.84       High
cufflinks 0.236        
cufflinks 0.014     Low Low
cufflinks 0.693        
cufflinks 0.355        
cufflinks 0.273        
cufflinks 0.042     Low Low
cufflinks 0.026     Low Low
cufflinks 1.014        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.419        
cufflinks 0.013     Low Low

0 Strain