Gene : Sobic.002G042100 S. bicolor v3.1.1
Defline:  (1 of 5) PTHR23024//PTHR23024:SF162 - MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES // SUBFAMILY NOT NAMED Genomic Order:  434
Name:  ? Sobic.002G042100 Secondary Identifier:  ? PAC:37951716
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6303 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G042100 0.5kb upstream 0.5kb upstream 1557 true Chr02: 4021751-4023307 Sorghum bicolor
Sobic.002G042100 0.5kb upstream 0.5kb upstream 500 false Chr02: 4022808-4023307 Sorghum bicolor
Sobic.002G042100 0.5kb downstream 0.5kb downstream 1557 true Chr02: 4021251-4022807 Sorghum bicolor
Sobic.002G042100 0.5kb downstream 0.5kb downstream 500 false Chr02: 4021251-4021750 Sorghum bicolor
Sobic.002G042100 1.0kb upstream 1.0kb upstream 2057 true Chr02: 4021751-4023807 Sorghum bicolor
Sobic.002G042100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4022808-4023807 Sorghum bicolor
Sobic.002G042100 1.0kb downstream 1.0kb downstream 2057 true Chr02: 4020751-4022807 Sorghum bicolor
Sobic.002G042100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4020751-4021750 Sorghum bicolor
Sobic.002G042100 2.0kb upstream 2.0kb upstream 3057 true Chr02: 4021751-4024807 Sorghum bicolor
Sobic.002G042100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4022808-4024807 Sorghum bicolor
Sobic.002G042100 2.0kb downstream 2.0kb downstream 3057 true Chr02: 4019751-4022807 Sorghum bicolor
Sobic.002G042100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4019751-4021750 Sorghum bicolor
Sobic.002G042100 5.0kb upstream 5.0kb upstream 6057 true Chr02: 4021751-4027807 Sorghum bicolor
Sobic.002G042100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4022808-4027807 Sorghum bicolor
Sobic.002G042100 5.0kb downstream 5.0kb downstream 6057 true Chr02: 4016751-4022807 Sorghum bicolor
Sobic.002G042100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4016751-4021750 Sorghum bicolor
Sobic.002G042100 10.0kb upstream 10.0kb upstream 11057 true Chr02: 4021751-4032807 Sorghum bicolor
Sobic.002G042100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4022808-4032807 Sorghum bicolor
Sobic.002G042100 10.0kb downstream 10.0kb downstream 11057 true Chr02: 4011751-4022807 Sorghum bicolor
Sobic.002G042100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4011751-4021750 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183341 5267 Panicoideae View MSA
124584166 5269 Grass View MSA
122047300 5273 Angiosperm View MSA
123428915 5275 Viridiplantae View MSA
121350136 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.349        
cufflinks 0.21        
cufflinks 0.483        
cufflinks 0.174        
cufflinks 0.145        
cufflinks 0.309        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.848       High
cufflinks 0.876       High
cufflinks 0.057     Low Low
cufflinks 0.356        
cufflinks 0.13        
cufflinks 1.613       High
cufflinks 0.403        
cufflinks 0.143        
cufflinks 0.657       High
cufflinks 0.055     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.237        
cufflinks 0.32        
cufflinks 0.164        
cufflinks 0.464        
cufflinks 0.025     Low Low
cufflinks 0.408        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.078     Low Low
cufflinks 0.019     Low Low

0 Strain