Gene : Sobic.002G033400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR19384//PTHR19384:SF78 - FLAVODOXIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  345
Name:  ? Sobic.002G033400 Secondary Identifier:  ? PAC:37952731
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PHOTOALL-PWY Sorghum bicolor pathologic  
Sbicolor PWY-101 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G033400 0.5kb upstream 0.5kb upstream 5635 true Chr02: 3054274-3059908 Sorghum bicolor
Sobic.002G033400 0.5kb upstream 0.5kb upstream 500 false Chr02: 3059409-3059908 Sorghum bicolor
Sobic.002G033400 0.5kb downstream 0.5kb downstream 5635 true Chr02: 3053774-3059408 Sorghum bicolor
Sobic.002G033400 0.5kb downstream 0.5kb downstream 500 false Chr02: 3053774-3054273 Sorghum bicolor
Sobic.002G033400 1.0kb upstream 1.0kb upstream 6135 true Chr02: 3054274-3060408 Sorghum bicolor
Sobic.002G033400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3059409-3060408 Sorghum bicolor
Sobic.002G033400 1.0kb downstream 1.0kb downstream 6135 true Chr02: 3053274-3059408 Sorghum bicolor
Sobic.002G033400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3053274-3054273 Sorghum bicolor
Sobic.002G033400 2.0kb upstream 2.0kb upstream 7135 true Chr02: 3054274-3061408 Sorghum bicolor
Sobic.002G033400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3059409-3061408 Sorghum bicolor
Sobic.002G033400 2.0kb downstream 2.0kb downstream 7135 true Chr02: 3052274-3059408 Sorghum bicolor
Sobic.002G033400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3052274-3054273 Sorghum bicolor
Sobic.002G033400 5.0kb upstream 5.0kb upstream 10135 true Chr02: 3054274-3064408 Sorghum bicolor
Sobic.002G033400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3059409-3064408 Sorghum bicolor
Sobic.002G033400 5.0kb downstream 5.0kb downstream 10135 true Chr02: 3049274-3059408 Sorghum bicolor
Sobic.002G033400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3049274-3054273 Sorghum bicolor
Sobic.002G033400 10.0kb upstream 10.0kb upstream 15135 true Chr02: 3054274-3069408 Sorghum bicolor
Sobic.002G033400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3059409-3069408 Sorghum bicolor
Sobic.002G033400 10.0kb downstream 10.0kb downstream 15135 true Chr02: 3044274-3059408 Sorghum bicolor
Sobic.002G033400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3044274-3054273 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182750 5267 Panicoideae View MSA
124591043 5269 Grass View MSA
122045006 5273 Angiosperm View MSA
121347443 5274 Embryophyte View MSA
123424825 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.11       Low
cufflinks 4.466       Low
cufflinks 6.604        
cufflinks 8.529        
cufflinks 5.66        
cufflinks 6.544        
cufflinks 7.845        
cufflinks 7.234        
cufflinks 13.048     High High
cufflinks 14.925     High High
cufflinks 13.331     High High
cufflinks 13.316     High High
cufflinks 10.322        
cufflinks 14.033     High High
cufflinks 8.031        
cufflinks 7.119        
cufflinks 7.768        
cufflinks 8.527        
cufflinks 9.869        
cufflinks 8.891        
cufflinks 5.683        
cufflinks 9.061        
cufflinks 13.555     High High
cufflinks 12.817     High High
cufflinks 5.84        
cufflinks 3.96       Low
cufflinks 10.935        
cufflinks 1.817       Low
cufflinks 7.498        
cufflinks 9.497        

0 Strain