Gene : Sobic.005G218100 S. bicolor v3.1.1
Defline:  (1 of 4) 2.1.1.79 - Cyclopropane-fatty-acyl-phospholipid synthase / Unsaturated-phospholipid methyltransferase Genomic Order:  2292
Name:  ? Sobic.005G218100 Secondary Identifier:  ? PAC:37925642
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-4942 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G218100 0.5kb upstream 0.5kb upstream 10348 true Chr05: 70427461-70437808 Sorghum bicolor
Sobic.005G218100 0.5kb upstream 0.5kb upstream 500 false Chr05: 70437309-70437808 Sorghum bicolor
Sobic.005G218100 0.5kb downstream 0.5kb downstream 10348 true Chr05: 70426961-70437308 Sorghum bicolor
Sobic.005G218100 0.5kb downstream 0.5kb downstream 500 false Chr05: 70426961-70427460 Sorghum bicolor
Sobic.005G218100 1.0kb upstream 1.0kb upstream 10848 true Chr05: 70427461-70438308 Sorghum bicolor
Sobic.005G218100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 70437309-70438308 Sorghum bicolor
Sobic.005G218100 1.0kb downstream 1.0kb downstream 10848 true Chr05: 70426461-70437308 Sorghum bicolor
Sobic.005G218100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 70426461-70427460 Sorghum bicolor
Sobic.005G218100 2.0kb upstream 2.0kb upstream 11848 true Chr05: 70427461-70439308 Sorghum bicolor
Sobic.005G218100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 70437309-70439308 Sorghum bicolor
Sobic.005G218100 2.0kb downstream 2.0kb downstream 11848 true Chr05: 70425461-70437308 Sorghum bicolor
Sobic.005G218100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 70425461-70427460 Sorghum bicolor
Sobic.005G218100 5.0kb upstream 5.0kb upstream 14848 true Chr05: 70427461-70442308 Sorghum bicolor
Sobic.005G218100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 70437309-70442308 Sorghum bicolor
Sobic.005G218100 5.0kb downstream 5.0kb downstream 14848 true Chr05: 70422461-70437308 Sorghum bicolor
Sobic.005G218100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 70422461-70427460 Sorghum bicolor
Sobic.005G218100 10.0kb upstream 10.0kb upstream 19848 true Chr05: 70427461-70447308 Sorghum bicolor
Sobic.005G218100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 70437309-70447308 Sorghum bicolor
Sobic.005G218100 10.0kb downstream 10.0kb downstream 19848 true Chr05: 70417461-70437308 Sorghum bicolor
Sobic.005G218100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 70417461-70427460 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194828 5267 Panicoideae View MSA
124466811 5269 Grass View MSA
122047395 5273 Angiosperm View MSA
121346129 5274 Embryophyte View MSA
123428105 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.06     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.287       High
cufflinks 1.158       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.037     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.614       High
cufflinks 5.201       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.983       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  
cufflinks 0.006     Low  
cufflinks 0.008     Low  
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.125        
cufflinks 0.035     Low  

0 Strain