Gene : Sobic.005G218000 S. bicolor v3.1.1
Defline:  (1 of 1) PF01593//PF12847 - Flavin containing amine oxidoreductase (Amino_oxidase) // Methyltransferase domain (Methyltransf_18) Genomic Order:  2291
Name:  ? Sobic.005G218000 Secondary Identifier:  ? PAC:37924405
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-4942 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G218000 0.5kb upstream 0.5kb upstream 9390 true Chr05: 70403763-70413152 Sorghum bicolor
Sobic.005G218000 0.5kb upstream 0.5kb upstream 500 false Chr05: 70412653-70413152 Sorghum bicolor
Sobic.005G218000 0.5kb downstream 0.5kb downstream 9390 true Chr05: 70403263-70412652 Sorghum bicolor
Sobic.005G218000 0.5kb downstream 0.5kb downstream 500 false Chr05: 70403263-70403762 Sorghum bicolor
Sobic.005G218000 1.0kb upstream 1.0kb upstream 9890 true Chr05: 70403763-70413652 Sorghum bicolor
Sobic.005G218000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 70412653-70413652 Sorghum bicolor
Sobic.005G218000 1.0kb downstream 1.0kb downstream 9890 true Chr05: 70402763-70412652 Sorghum bicolor
Sobic.005G218000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 70402763-70403762 Sorghum bicolor
Sobic.005G218000 2.0kb upstream 2.0kb upstream 10890 true Chr05: 70403763-70414652 Sorghum bicolor
Sobic.005G218000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 70412653-70414652 Sorghum bicolor
Sobic.005G218000 2.0kb downstream 2.0kb downstream 10890 true Chr05: 70401763-70412652 Sorghum bicolor
Sobic.005G218000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 70401763-70403762 Sorghum bicolor
Sobic.005G218000 5.0kb upstream 5.0kb upstream 13890 true Chr05: 70403763-70417652 Sorghum bicolor
Sobic.005G218000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 70412653-70417652 Sorghum bicolor
Sobic.005G218000 5.0kb downstream 5.0kb downstream 13890 true Chr05: 70398763-70412652 Sorghum bicolor
Sobic.005G218000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 70398763-70403762 Sorghum bicolor
Sobic.005G218000 10.0kb upstream 10.0kb upstream 18890 true Chr05: 70403763-70422652 Sorghum bicolor
Sobic.005G218000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 70412653-70422652 Sorghum bicolor
Sobic.005G218000 10.0kb downstream 10.0kb downstream 18890 true Chr05: 70393763-70412652 Sorghum bicolor
Sobic.005G218000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 70393763-70403762 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194828 5267 Panicoideae View MSA
124466811 5269 Grass View MSA
122047395 5273 Angiosperm View MSA
121346129 5274 Embryophyte View MSA
123428105 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.392        
cufflinks 0.004     Low  
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.097        
cufflinks 0.032     Low  
cufflinks 5.759       High
cufflinks 0.535        
cufflinks 0.076     Low  
cufflinks 0.368        
cufflinks 0.07     Low  
cufflinks 0.003     Low Low
cufflinks 0.169        
cufflinks 0.004     Low  
cufflinks 12.069     High High
cufflinks 0.002     Low Low
cufflinks 5.918       High
cufflinks 6.493       High
cufflinks 0.014     Low  
cufflinks 5.821       High
cufflinks 0.509        
cufflinks 0.004     Low  
cufflinks 0.007     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.002     Low Low
cufflinks 0.002     Low Low
cufflinks 1.176       High
cufflinks 16.498     High High

0 Strain