Gene : Sobic.006G073200 S. bicolor v3.1.1
Defline:  (1 of 1) K12655 - OTU domain-containing protein 5 (OTUD5, DUBA) Genomic Order:  757
Name:  ? Sobic.006G073200 Secondary Identifier:  ? PAC:37946030
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G073200 0.5kb upstream 0.5kb upstream 6055 true Chr06: 43572212-43578266 Sorghum bicolor
Sobic.006G073200 0.5kb upstream 0.5kb upstream 500 false Chr06: 43572212-43572711 Sorghum bicolor
Sobic.006G073200 0.5kb downstream 0.5kb downstream 6055 true Chr06: 43572712-43578766 Sorghum bicolor
Sobic.006G073200 0.5kb downstream 0.5kb downstream 500 false Chr06: 43578267-43578766 Sorghum bicolor
Sobic.006G073200 1.0kb upstream 1.0kb upstream 6555 true Chr06: 43571712-43578266 Sorghum bicolor
Sobic.006G073200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 43571712-43572711 Sorghum bicolor
Sobic.006G073200 1.0kb downstream 1.0kb downstream 6555 true Chr06: 43572712-43579266 Sorghum bicolor
Sobic.006G073200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 43578267-43579266 Sorghum bicolor
Sobic.006G073200 2.0kb upstream 2.0kb upstream 7555 true Chr06: 43570712-43578266 Sorghum bicolor
Sobic.006G073200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 43570712-43572711 Sorghum bicolor
Sobic.006G073200 2.0kb downstream 2.0kb downstream 7555 true Chr06: 43572712-43580266 Sorghum bicolor
Sobic.006G073200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 43578267-43580266 Sorghum bicolor
Sobic.006G073200 5.0kb upstream 5.0kb upstream 10555 true Chr06: 43567712-43578266 Sorghum bicolor
Sobic.006G073200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 43567712-43572711 Sorghum bicolor
Sobic.006G073200 5.0kb downstream 5.0kb downstream 10555 true Chr06: 43572712-43583266 Sorghum bicolor
Sobic.006G073200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 43578267-43583266 Sorghum bicolor
Sobic.006G073200 10.0kb upstream 10.0kb upstream 15555 true Chr06: 43562712-43578266 Sorghum bicolor
Sobic.006G073200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 43562712-43572711 Sorghum bicolor
Sobic.006G073200 10.0kb downstream 10.0kb downstream 15555 true Chr06: 43572712-43588266 Sorghum bicolor
Sobic.006G073200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 43578267-43588266 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178102 5267 Panicoideae View MSA
124584670 5269 Grass View MSA
122045711 5273 Angiosperm View MSA
121348334 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.988     High  
cufflinks 6.299       Low
cufflinks 7.102       Low
cufflinks 8.273       Low
cufflinks 10.855        
cufflinks 11.367        
cufflinks 10.094        
cufflinks 7.186       Low
cufflinks 15.325     High High
cufflinks 15.184     High High
cufflinks 11.737        
cufflinks 15.556     High High
cufflinks 12.657     High  
cufflinks 16.735     High High
cufflinks 13.796     High  
cufflinks 7.837       Low
cufflinks 10.511        
cufflinks 10.37        
cufflinks 8.199       Low
cufflinks 11.917     High  
cufflinks 11.873        
cufflinks 12.003     High  
cufflinks 14.778     High High
cufflinks 14.55     High High
cufflinks 7.557       Low
cufflinks 6.669     High Low
cufflinks 13.011     High  
cufflinks 12.581     High  
cufflinks 8.828        
cufflinks 14.588     High High

0 Strain