Gene : Sobic.006G073300 S. bicolor v3.1.1
Defline:  (1 of 234) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  758
Name:  ? Sobic.006G073300 Secondary Identifier:  ? PAC:37946217
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G073300 0.5kb upstream 0.5kb upstream 3489 true Chr06: 43582449-43585937 Sorghum bicolor
Sobic.006G073300 0.5kb upstream 0.5kb upstream 500 false Chr06: 43582449-43582948 Sorghum bicolor
Sobic.006G073300 0.5kb downstream 0.5kb downstream 3489 true Chr06: 43582949-43586437 Sorghum bicolor
Sobic.006G073300 0.5kb downstream 0.5kb downstream 500 false Chr06: 43585938-43586437 Sorghum bicolor
Sobic.006G073300 1.0kb upstream 1.0kb upstream 3989 true Chr06: 43581949-43585937 Sorghum bicolor
Sobic.006G073300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 43581949-43582948 Sorghum bicolor
Sobic.006G073300 1.0kb downstream 1.0kb downstream 3989 true Chr06: 43582949-43586937 Sorghum bicolor
Sobic.006G073300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 43585938-43586937 Sorghum bicolor
Sobic.006G073300 2.0kb upstream 2.0kb upstream 4989 true Chr06: 43580949-43585937 Sorghum bicolor
Sobic.006G073300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 43580949-43582948 Sorghum bicolor
Sobic.006G073300 2.0kb downstream 2.0kb downstream 4989 true Chr06: 43582949-43587937 Sorghum bicolor
Sobic.006G073300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 43585938-43587937 Sorghum bicolor
Sobic.006G073300 5.0kb upstream 5.0kb upstream 7989 true Chr06: 43577949-43585937 Sorghum bicolor
Sobic.006G073300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 43577949-43582948 Sorghum bicolor
Sobic.006G073300 5.0kb downstream 5.0kb downstream 7989 true Chr06: 43582949-43590937 Sorghum bicolor
Sobic.006G073300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 43585938-43590937 Sorghum bicolor
Sobic.006G073300 10.0kb upstream 10.0kb upstream 12989 true Chr06: 43572949-43585937 Sorghum bicolor
Sobic.006G073300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 43572949-43582948 Sorghum bicolor
Sobic.006G073300 10.0kb downstream 10.0kb downstream 12989 true Chr06: 43582949-43595937 Sorghum bicolor
Sobic.006G073300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 43585938-43595937 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176580 5267 Panicoideae View MSA
124570108 5269 Grass View MSA
122047965 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310823 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.182       High
cufflinks 0.47        
cufflinks 0.81        
cufflinks 1.408        
cufflinks 1.11        
cufflinks 1.308        
cufflinks 0.487        
cufflinks 0.168       Low
cufflinks 1.86       High
cufflinks 1.673        
cufflinks 0.739        
cufflinks 0.448        
cufflinks 0.893        
cufflinks 0.513        
cufflinks 1.082        
cufflinks 1.099        
cufflinks 0.572        
cufflinks 0.503        
cufflinks 0.598        
cufflinks 0.617        
cufflinks 0.906        
cufflinks 1.439        
cufflinks 0.709        
cufflinks 0.74        
cufflinks 0.646        
cufflinks 0.341       Low
cufflinks 0.608        
cufflinks 19.171     High High
cufflinks 0.318       Low
cufflinks 1.033        

0 Strain