Gene : Sobic.002G115700 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  1177
Name:  ? Sobic.002G115700 Secondary Identifier:  ? PAC:37950606
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G115700 0.5kb upstream 0.5kb upstream 2028 true Chr02: 14235462-14237489 Sorghum bicolor
Sobic.002G115700 0.5kb upstream 0.5kb upstream 500 false Chr02: 14236990-14237489 Sorghum bicolor
Sobic.002G115700 0.5kb downstream 0.5kb downstream 2028 true Chr02: 14234962-14236989 Sorghum bicolor
Sobic.002G115700 0.5kb downstream 0.5kb downstream 500 false Chr02: 14234962-14235461 Sorghum bicolor
Sobic.002G115700 1.0kb upstream 1.0kb upstream 2528 true Chr02: 14235462-14237989 Sorghum bicolor
Sobic.002G115700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 14236990-14237989 Sorghum bicolor
Sobic.002G115700 1.0kb downstream 1.0kb downstream 2528 true Chr02: 14234462-14236989 Sorghum bicolor
Sobic.002G115700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 14234462-14235461 Sorghum bicolor
Sobic.002G115700 2.0kb upstream 2.0kb upstream 3528 true Chr02: 14235462-14238989 Sorghum bicolor
Sobic.002G115700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 14236990-14238989 Sorghum bicolor
Sobic.002G115700 2.0kb downstream 2.0kb downstream 3528 true Chr02: 14233462-14236989 Sorghum bicolor
Sobic.002G115700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 14233462-14235461 Sorghum bicolor
Sobic.002G115700 5.0kb upstream 5.0kb upstream 6528 true Chr02: 14235462-14241989 Sorghum bicolor
Sobic.002G115700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 14236990-14241989 Sorghum bicolor
Sobic.002G115700 5.0kb downstream 5.0kb downstream 6528 true Chr02: 14230462-14236989 Sorghum bicolor
Sobic.002G115700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 14230462-14235461 Sorghum bicolor
Sobic.002G115700 10.0kb upstream 10.0kb upstream 11528 true Chr02: 14235462-14246989 Sorghum bicolor
Sobic.002G115700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 14236990-14246989 Sorghum bicolor
Sobic.002G115700 10.0kb downstream 10.0kb downstream 11528 true Chr02: 14225462-14236989 Sorghum bicolor
Sobic.002G115700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 14225462-14235461 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186074 5267 Panicoideae View MSA
124577325 5269 Grass View MSA
122042999 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.182       High
cufflinks 0.333        
cufflinks 0.351        
cufflinks 0.451        
cufflinks 1.416        
cufflinks 1.472        
cufflinks 0.158       Low
cufflinks 0.533        
cufflinks 2.01       High
cufflinks 2.313       High
cufflinks 0.552        
cufflinks 0.688        
cufflinks 1.31        
cufflinks 0.455        
cufflinks 0.483        
cufflinks 0.205       Low
cufflinks 0.141       Low
cufflinks 0.046     Low Low
cufflinks 0.328        
cufflinks 0.153       Low
cufflinks 0.417        
cufflinks 1.446        
cufflinks 0.439        
cufflinks 0.404        
cufflinks 0.684        
cufflinks 0.768        
cufflinks 0.358        
cufflinks 4.645       High
cufflinks 0.286        
cufflinks 0.459        

0 Strain