Gene : Sobic.006G080900 S. bicolor v3.1.1
Defline:  (1 of 2) 6.3.4.21 - Nicotinate phosphoribosyltransferase / Nicotinic acid phosphoribosyltransferase Genomic Order:  841
Name:  ? Sobic.006G080900 Secondary Identifier:  ? PAC:37947662
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5381 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G080900 0.5kb upstream 0.5kb upstream 10101 true Chr06: 44976705-44986805 Sorghum bicolor
Sobic.006G080900 0.5kb upstream 0.5kb upstream 500 false Chr06: 44976705-44977204 Sorghum bicolor
Sobic.006G080900 0.5kb downstream 0.5kb downstream 10101 true Chr06: 44977205-44987305 Sorghum bicolor
Sobic.006G080900 0.5kb downstream 0.5kb downstream 500 false Chr06: 44986806-44987305 Sorghum bicolor
Sobic.006G080900 1.0kb upstream 1.0kb upstream 10601 true Chr06: 44976205-44986805 Sorghum bicolor
Sobic.006G080900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 44976205-44977204 Sorghum bicolor
Sobic.006G080900 1.0kb downstream 1.0kb downstream 10601 true Chr06: 44977205-44987805 Sorghum bicolor
Sobic.006G080900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 44986806-44987805 Sorghum bicolor
Sobic.006G080900 2.0kb upstream 2.0kb upstream 11601 true Chr06: 44975205-44986805 Sorghum bicolor
Sobic.006G080900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 44975205-44977204 Sorghum bicolor
Sobic.006G080900 2.0kb downstream 2.0kb downstream 11601 true Chr06: 44977205-44988805 Sorghum bicolor
Sobic.006G080900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 44986806-44988805 Sorghum bicolor
Sobic.006G080900 5.0kb upstream 5.0kb upstream 14601 true Chr06: 44972205-44986805 Sorghum bicolor
Sobic.006G080900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 44972205-44977204 Sorghum bicolor
Sobic.006G080900 5.0kb downstream 5.0kb downstream 14601 true Chr06: 44977205-44991805 Sorghum bicolor
Sobic.006G080900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 44986806-44991805 Sorghum bicolor
Sobic.006G080900 10.0kb upstream 10.0kb upstream 19601 true Chr06: 44967205-44986805 Sorghum bicolor
Sobic.006G080900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 44967205-44977204 Sorghum bicolor
Sobic.006G080900 10.0kb downstream 10.0kb downstream 19601 true Chr06: 44977205-44996805 Sorghum bicolor
Sobic.006G080900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 44986806-44996805 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186329 5267 Panicoideae View MSA
124568633 5269 Grass View MSA
122047355 5273 Angiosperm View MSA
121346796 5274 Embryophyte View MSA
123425475 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.792       Low
cufflinks 3.163        
cufflinks 6.626       High
cufflinks 5.624       High
cufflinks 2.378        
cufflinks 4.276        
cufflinks 2.283        
cufflinks 2.147        
cufflinks 4.112        
cufflinks 4.661        
cufflinks 5.188       High
cufflinks 4.99        
cufflinks 5.767       High
cufflinks 3.375        
cufflinks 3.804        
cufflinks 4.988        
cufflinks 1.957       Low
cufflinks 3.001        
cufflinks 2.565        
cufflinks 2.168        
cufflinks 0.969       Low
cufflinks 3.404        
cufflinks 5.144        
cufflinks 4.452        
cufflinks 2.96        
cufflinks 2.722        
cufflinks 7.454       High
cufflinks 1.067       Low
cufflinks 2.929        
cufflinks 3.129        

0 Strain