Gene : Sobic.006G083100 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.2.2 - Phosphoribosylglycinamide formyltransferase / Glycinamide ribonucleotide transformylase Genomic Order:  865
Name:  ? Sobic.006G083100 Secondary Identifier:  ? PAC:37945512
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6121 Sorghum bicolor pathologic  
Sbicolor PWY-6613 Sorghum bicolor pathologic  
Sbicolor PWY-841 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G083100 0.5kb upstream 0.5kb upstream 2687 true Chr06: 45179785-45182471 Sorghum bicolor
Sobic.006G083100 0.5kb upstream 0.5kb upstream 500 false Chr06: 45181972-45182471 Sorghum bicolor
Sobic.006G083100 0.5kb downstream 0.5kb downstream 2687 true Chr06: 45179285-45181971 Sorghum bicolor
Sobic.006G083100 0.5kb downstream 0.5kb downstream 500 false Chr06: 45179285-45179784 Sorghum bicolor
Sobic.006G083100 1.0kb upstream 1.0kb upstream 3187 true Chr06: 45179785-45182971 Sorghum bicolor
Sobic.006G083100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 45181972-45182971 Sorghum bicolor
Sobic.006G083100 1.0kb downstream 1.0kb downstream 3187 true Chr06: 45178785-45181971 Sorghum bicolor
Sobic.006G083100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 45178785-45179784 Sorghum bicolor
Sobic.006G083100 2.0kb upstream 2.0kb upstream 4187 true Chr06: 45179785-45183971 Sorghum bicolor
Sobic.006G083100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 45181972-45183971 Sorghum bicolor
Sobic.006G083100 2.0kb downstream 2.0kb downstream 4187 true Chr06: 45177785-45181971 Sorghum bicolor
Sobic.006G083100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 45177785-45179784 Sorghum bicolor
Sobic.006G083100 5.0kb upstream 5.0kb upstream 7187 true Chr06: 45179785-45186971 Sorghum bicolor
Sobic.006G083100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 45181972-45186971 Sorghum bicolor
Sobic.006G083100 5.0kb downstream 5.0kb downstream 7187 true Chr06: 45174785-45181971 Sorghum bicolor
Sobic.006G083100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 45174785-45179784 Sorghum bicolor
Sobic.006G083100 10.0kb upstream 10.0kb upstream 12187 true Chr06: 45179785-45191971 Sorghum bicolor
Sobic.006G083100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 45181972-45191971 Sorghum bicolor
Sobic.006G083100 10.0kb downstream 10.0kb downstream 12187 true Chr06: 45169785-45181971 Sorghum bicolor
Sobic.006G083100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 45169785-45179784 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175399 5267 Panicoideae View MSA
124585048 5269 Grass View MSA
122049914 5273 Angiosperm View MSA
121349551 5274 Embryophyte View MSA
123426469 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.131       High
cufflinks 1.519       Low
cufflinks 1.802       Low
cufflinks 2.644        
cufflinks 3.515        
cufflinks 4.673        
cufflinks 2.771        
cufflinks 1.833       Low
cufflinks 3.303        
cufflinks 5.003        
cufflinks 3.826        
cufflinks 4.084        
cufflinks 3.341        
cufflinks 4.539        
cufflinks 2.946        
cufflinks 2.008       Low
cufflinks 3.346        
cufflinks 3.06        
cufflinks 1.5       Low
cufflinks 3.262        
cufflinks 4.337        
cufflinks 4.441        
cufflinks 5.202       High
cufflinks 4.56        
cufflinks 0.861       Low
cufflinks 1.96       Low
cufflinks 2.042       Low
cufflinks 5.488       High
cufflinks 2.181        
cufflinks 3.331        

0 Strain