Gene : Sobic.002G104100 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR15629//PTHR15629:SF2 - SH3YL1 PROTEIN // SH3 DOMAIN-CONTAINING YSC84-LIKE PROTEIN 1 Genomic Order:  1057
Name:  ? Sobic.002G104100 Secondary Identifier:  ? PAC:37951626
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G104100 0.5kb upstream 0.5kb upstream 4058 true Chr02: 12277949-12282006 Sorghum bicolor
Sobic.002G104100 0.5kb upstream 0.5kb upstream 500 false Chr02: 12277949-12278448 Sorghum bicolor
Sobic.002G104100 0.5kb downstream 0.5kb downstream 4058 true Chr02: 12278449-12282506 Sorghum bicolor
Sobic.002G104100 0.5kb downstream 0.5kb downstream 500 false Chr02: 12282007-12282506 Sorghum bicolor
Sobic.002G104100 1.0kb upstream 1.0kb upstream 4558 true Chr02: 12277449-12282006 Sorghum bicolor
Sobic.002G104100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 12277449-12278448 Sorghum bicolor
Sobic.002G104100 1.0kb downstream 1.0kb downstream 4558 true Chr02: 12278449-12283006 Sorghum bicolor
Sobic.002G104100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 12282007-12283006 Sorghum bicolor
Sobic.002G104100 2.0kb upstream 2.0kb upstream 5558 true Chr02: 12276449-12282006 Sorghum bicolor
Sobic.002G104100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 12276449-12278448 Sorghum bicolor
Sobic.002G104100 2.0kb downstream 2.0kb downstream 5558 true Chr02: 12278449-12284006 Sorghum bicolor
Sobic.002G104100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 12282007-12284006 Sorghum bicolor
Sobic.002G104100 5.0kb upstream 5.0kb upstream 8558 true Chr02: 12273449-12282006 Sorghum bicolor
Sobic.002G104100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 12273449-12278448 Sorghum bicolor
Sobic.002G104100 5.0kb downstream 5.0kb downstream 8558 true Chr02: 12278449-12287006 Sorghum bicolor
Sobic.002G104100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 12282007-12287006 Sorghum bicolor
Sobic.002G104100 10.0kb upstream 10.0kb upstream 13558 true Chr02: 12268449-12282006 Sorghum bicolor
Sobic.002G104100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 12268449-12278448 Sorghum bicolor
Sobic.002G104100 10.0kb downstream 10.0kb downstream 13558 true Chr02: 12278449-12292006 Sorghum bicolor
Sobic.002G104100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 12282007-12292006 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185640 5267 Panicoideae View MSA
124575860 5269 Grass View MSA
122046278 5273 Angiosperm View MSA
121345874 5274 Embryophyte View MSA
123426176 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.457        
cufflinks 16.574     High High
cufflinks 15.75     High High
cufflinks 12.169     High  
cufflinks 6.866        
cufflinks 12.781        
cufflinks 15.101     High High
cufflinks 10.609     High  
cufflinks 10.167        
cufflinks 10.368        
cufflinks 6.46        
cufflinks 8.008        
cufflinks 9.238        
cufflinks 6.323        
cufflinks 9.659        
cufflinks 22.305     High High
cufflinks 13.554     High High
cufflinks 13.849     High High
cufflinks 11.264     High  
cufflinks 17.975     High High
cufflinks 9.303        
cufflinks 5.47       Low
cufflinks 6.352        
cufflinks 6.307        
cufflinks 20.066     High High
cufflinks 13.303     High  
cufflinks 8.975        
cufflinks 5.516       Low
cufflinks 8.301        
cufflinks 9.246        

0 Strain