Gene : Sobic.006G088100 S. bicolor v3.1.1
Defline:  (1 of 1) K13206 - coiled-coil domain-containing protein 55 (CCDC55) Genomic Order:  912
Name:  ? Sobic.006G088100 Secondary Identifier:  ? PAC:37948692
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G088100 0.5kb upstream 0.5kb upstream 4724 true Chr06: 45723217-45727940 Sorghum bicolor
Sobic.006G088100 0.5kb upstream 0.5kb upstream 500 false Chr06: 45727441-45727940 Sorghum bicolor
Sobic.006G088100 0.5kb downstream 0.5kb downstream 4724 true Chr06: 45722717-45727440 Sorghum bicolor
Sobic.006G088100 0.5kb downstream 0.5kb downstream 500 false Chr06: 45722717-45723216 Sorghum bicolor
Sobic.006G088100 1.0kb upstream 1.0kb upstream 5224 true Chr06: 45723217-45728440 Sorghum bicolor
Sobic.006G088100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 45727441-45728440 Sorghum bicolor
Sobic.006G088100 1.0kb downstream 1.0kb downstream 5224 true Chr06: 45722217-45727440 Sorghum bicolor
Sobic.006G088100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 45722217-45723216 Sorghum bicolor
Sobic.006G088100 2.0kb upstream 2.0kb upstream 6224 true Chr06: 45723217-45729440 Sorghum bicolor
Sobic.006G088100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 45727441-45729440 Sorghum bicolor
Sobic.006G088100 2.0kb downstream 2.0kb downstream 6224 true Chr06: 45721217-45727440 Sorghum bicolor
Sobic.006G088100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 45721217-45723216 Sorghum bicolor
Sobic.006G088100 5.0kb upstream 5.0kb upstream 9224 true Chr06: 45723217-45732440 Sorghum bicolor
Sobic.006G088100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 45727441-45732440 Sorghum bicolor
Sobic.006G088100 5.0kb downstream 5.0kb downstream 9224 true Chr06: 45718217-45727440 Sorghum bicolor
Sobic.006G088100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 45718217-45723216 Sorghum bicolor
Sobic.006G088100 10.0kb upstream 10.0kb upstream 14224 true Chr06: 45723217-45737440 Sorghum bicolor
Sobic.006G088100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 45727441-45737440 Sorghum bicolor
Sobic.006G088100 10.0kb downstream 10.0kb downstream 14224 true Chr06: 45713217-45727440 Sorghum bicolor
Sobic.006G088100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 45713217-45723216 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184438 5267 Panicoideae View MSA
124588867 5269 Grass View MSA
122042336 5273 Angiosperm View MSA
121346143 5274 Embryophyte View MSA
123426491 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.857     High High
cufflinks 10.929     High  
cufflinks 12.982     High  
cufflinks 12.35     High  
cufflinks 6.523       Low
cufflinks 11.243        
cufflinks 11.128        
cufflinks 7.212       Low
cufflinks 9.268        
cufflinks 7.599        
cufflinks 9.518        
cufflinks 11.326        
cufflinks 7.042       Low
cufflinks 11.209        
cufflinks 11.255        
cufflinks 18.123     High High
cufflinks 12.712     High  
cufflinks 12.807     High  
cufflinks 12.014     High  
cufflinks 15.66     High High
cufflinks 11.441        
cufflinks 10.073        
cufflinks 11.591     High  
cufflinks 10.605        
cufflinks 10.765     High  
cufflinks 7.277     High Low
cufflinks 7.309       Low
cufflinks 29.602     High High
cufflinks 8.464        
cufflinks 11.049        

0 Strain