Gene : Sobic.002G211900 S. bicolor v3.1.1
Defline:  (1 of 1) K16274 - E3 ubiquitin-protein ligase AIP2 [EC:6.3.2.19] (AIP2) Genomic Order:  2164
Name:  ? Sobic.002G211900 Secondary Identifier:  ? PAC:37954541
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G211900 0.5kb upstream 0.5kb upstream 4327 true Chr02: 60436281-60440607 Sorghum bicolor
Sobic.002G211900 0.5kb upstream 0.5kb upstream 500 false Chr02: 60440108-60440607 Sorghum bicolor
Sobic.002G211900 0.5kb downstream 0.5kb downstream 4327 true Chr02: 60435781-60440107 Sorghum bicolor
Sobic.002G211900 0.5kb downstream 0.5kb downstream 500 false Chr02: 60435781-60436280 Sorghum bicolor
Sobic.002G211900 1.0kb upstream 1.0kb upstream 4827 true Chr02: 60436281-60441107 Sorghum bicolor
Sobic.002G211900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 60440108-60441107 Sorghum bicolor
Sobic.002G211900 1.0kb downstream 1.0kb downstream 4827 true Chr02: 60435281-60440107 Sorghum bicolor
Sobic.002G211900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 60435281-60436280 Sorghum bicolor
Sobic.002G211900 2.0kb upstream 2.0kb upstream 5827 true Chr02: 60436281-60442107 Sorghum bicolor
Sobic.002G211900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 60440108-60442107 Sorghum bicolor
Sobic.002G211900 2.0kb downstream 2.0kb downstream 5827 true Chr02: 60434281-60440107 Sorghum bicolor
Sobic.002G211900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 60434281-60436280 Sorghum bicolor
Sobic.002G211900 5.0kb upstream 5.0kb upstream 8827 true Chr02: 60436281-60445107 Sorghum bicolor
Sobic.002G211900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 60440108-60445107 Sorghum bicolor
Sobic.002G211900 5.0kb downstream 5.0kb downstream 8827 true Chr02: 60431281-60440107 Sorghum bicolor
Sobic.002G211900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 60431281-60436280 Sorghum bicolor
Sobic.002G211900 10.0kb upstream 10.0kb upstream 13827 true Chr02: 60436281-60450107 Sorghum bicolor
Sobic.002G211900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 60440108-60450107 Sorghum bicolor
Sobic.002G211900 10.0kb downstream 10.0kb downstream 13827 true Chr02: 60426281-60440107 Sorghum bicolor
Sobic.002G211900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 60426281-60436280 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026169 5273 Angiosperm View MSA
122183122 5267 Panicoideae View MSA
124571949 5269 Grass View MSA
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.784     High High
cufflinks 3.387       Low
cufflinks 4.867        
cufflinks 5.516        
cufflinks 6.35        
cufflinks 7.77        
cufflinks 5.065        
cufflinks 6.049        
cufflinks 6.218        
cufflinks 7.056        
cufflinks 9.251        
cufflinks 11.43       High
cufflinks 8.716        
cufflinks 12.405     High High
cufflinks 7.339        
cufflinks 5.148        
cufflinks 5.329        
cufflinks 5.178        
cufflinks 6.944        
cufflinks 7.086        
cufflinks 4.035       Low
cufflinks 7.775        
cufflinks 11.393     High High
cufflinks 10.762        
cufflinks 4.064       Low
cufflinks 3.366       Low
cufflinks 7.61        
cufflinks 12.894     High High
cufflinks 6.167        
cufflinks 6.105        

0 Strain