Gene : Sobic.002G205100 S. bicolor v3.1.1
Defline:  (1 of 10) K13065 - shikimate O-hydroxycinnamoyltransferase (E2.3.1.133, HCT) Genomic Order:  2100
Name:  ? Sobic.002G205100 Secondary Identifier:  ? PAC:37952938
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-361 Sorghum bicolor pathologic  
Sbicolor PWY-6040 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G205100 0.5kb upstream 0.5kb upstream 2944 true Chr02: 59647983-59650926 Sorghum bicolor
Sobic.002G205100 0.5kb upstream 0.5kb upstream 500 false Chr02: 59650427-59650926 Sorghum bicolor
Sobic.002G205100 0.5kb downstream 0.5kb downstream 2944 true Chr02: 59647483-59650426 Sorghum bicolor
Sobic.002G205100 0.5kb downstream 0.5kb downstream 500 false Chr02: 59647483-59647982 Sorghum bicolor
Sobic.002G205100 1.0kb upstream 1.0kb upstream 3444 true Chr02: 59647983-59651426 Sorghum bicolor
Sobic.002G205100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 59650427-59651426 Sorghum bicolor
Sobic.002G205100 1.0kb downstream 1.0kb downstream 3444 true Chr02: 59646983-59650426 Sorghum bicolor
Sobic.002G205100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 59646983-59647982 Sorghum bicolor
Sobic.002G205100 2.0kb upstream 2.0kb upstream 4444 true Chr02: 59647983-59652426 Sorghum bicolor
Sobic.002G205100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 59650427-59652426 Sorghum bicolor
Sobic.002G205100 2.0kb downstream 2.0kb downstream 4444 true Chr02: 59645983-59650426 Sorghum bicolor
Sobic.002G205100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 59645983-59647982 Sorghum bicolor
Sobic.002G205100 5.0kb upstream 5.0kb upstream 7444 true Chr02: 59647983-59655426 Sorghum bicolor
Sobic.002G205100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 59650427-59655426 Sorghum bicolor
Sobic.002G205100 5.0kb downstream 5.0kb downstream 7444 true Chr02: 59642983-59650426 Sorghum bicolor
Sobic.002G205100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 59642983-59647982 Sorghum bicolor
Sobic.002G205100 10.0kb upstream 10.0kb upstream 12444 true Chr02: 59647983-59660426 Sorghum bicolor
Sobic.002G205100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 59650427-59660426 Sorghum bicolor
Sobic.002G205100 10.0kb downstream 10.0kb downstream 12444 true Chr02: 59637983-59650426 Sorghum bicolor
Sobic.002G205100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 59637983-59647982 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994011 5273 Angiosperm View MSA
122186629 5267 Panicoideae View MSA
124582486 5269 Grass View MSA
121264258 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low Low
cufflinks 0.013     Low Low
cufflinks 0.018     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.267       High
cufflinks 0.141        
cufflinks 0.334        
cufflinks 0.51        
cufflinks 0.068     Low  
cufflinks 0.216        
cufflinks 0.425        
cufflinks 0.748        
cufflinks 0.21        
cufflinks 1.861       High
cufflinks 0.076     Low  
cufflinks 0.181        
cufflinks 0.141        
cufflinks 0.072     Low  
cufflinks 0.164        
cufflinks 0.01     Low Low
cufflinks 0.113     Low  
cufflinks 0.238        
cufflinks 0.176        
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.156        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.351        
cufflinks 2.149       High

0 Strain