Gene : Sobic.002G204400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR24115//PTHR24115:SF459 - FAMILY NOT NAMED // CENTROMERE-ASSOCIATED PROTEIN E Genomic Order:  2093
Name:  ? Sobic.002G204400 Secondary Identifier:  ? PAC:37949896
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G204400 0.5kb upstream 0.5kb upstream 14491 true Chr02: 59580582-59595072 Sorghum bicolor
Sobic.002G204400 0.5kb upstream 0.5kb upstream 500 false Chr02: 59594573-59595072 Sorghum bicolor
Sobic.002G204400 0.5kb downstream 0.5kb downstream 14491 true Chr02: 59580082-59594572 Sorghum bicolor
Sobic.002G204400 0.5kb downstream 0.5kb downstream 500 false Chr02: 59580082-59580581 Sorghum bicolor
Sobic.002G204400 1.0kb upstream 1.0kb upstream 14991 true Chr02: 59580582-59595572 Sorghum bicolor
Sobic.002G204400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 59594573-59595572 Sorghum bicolor
Sobic.002G204400 1.0kb downstream 1.0kb downstream 14991 true Chr02: 59579582-59594572 Sorghum bicolor
Sobic.002G204400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 59579582-59580581 Sorghum bicolor
Sobic.002G204400 2.0kb upstream 2.0kb upstream 15991 true Chr02: 59580582-59596572 Sorghum bicolor
Sobic.002G204400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 59594573-59596572 Sorghum bicolor
Sobic.002G204400 2.0kb downstream 2.0kb downstream 15991 true Chr02: 59578582-59594572 Sorghum bicolor
Sobic.002G204400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 59578582-59580581 Sorghum bicolor
Sobic.002G204400 5.0kb upstream 5.0kb upstream 18991 true Chr02: 59580582-59599572 Sorghum bicolor
Sobic.002G204400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 59594573-59599572 Sorghum bicolor
Sobic.002G204400 5.0kb downstream 5.0kb downstream 18991 true Chr02: 59575582-59594572 Sorghum bicolor
Sobic.002G204400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 59575582-59580581 Sorghum bicolor
Sobic.002G204400 10.0kb upstream 10.0kb upstream 23991 true Chr02: 59580582-59604572 Sorghum bicolor
Sobic.002G204400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 59594573-59604572 Sorghum bicolor
Sobic.002G204400 10.0kb downstream 10.0kb downstream 23991 true Chr02: 59570582-59594572 Sorghum bicolor
Sobic.002G204400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 59570582-59580581 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183740 5267 Panicoideae View MSA
124581399 5269 Grass View MSA
122043675 5273 Angiosperm View MSA
123429039 5275 Viridiplantae View MSA
121348055 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.031     Low  
cufflinks 0.005     Low Low
cufflinks 0.011     Low Low
cufflinks 0.013     Low Low
cufflinks 0.969       High
cufflinks 0.036     Low  
cufflinks 0.416        
cufflinks 0.015     Low Low
cufflinks 0.064     Low  
cufflinks 0.072     Low  
cufflinks 0.314        
cufflinks 0.212        
cufflinks 0.071     Low  
cufflinks 0.203        
cufflinks 0.286        
cufflinks 0.006     Low Low
cufflinks 0.362        
cufflinks 0.455        
cufflinks 0.018     Low  
cufflinks 0.249        
cufflinks 1.716       High
cufflinks 0.297        
cufflinks 0.265        
cufflinks 0.285        
cufflinks 0.01     Low Low
cufflinks 0.003     Low Low
cufflinks 0.096        
cufflinks 0.005     Low Low
cufflinks 0.051     Low  
cufflinks 0.41        

0 Strain