Gene : Sobic.002G196600 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR11353//PTHR11353:SF86 - CHAPERONIN // SUBFAMILY NOT NAMED Genomic Order:  2009
Name:  ? Sobic.002G196600 Secondary Identifier:  ? PAC:37955149
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6352 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G196600 0.5kb upstream 0.5kb upstream 8309 true Chr02: 58556339-58564647 Sorghum bicolor
Sobic.002G196600 0.5kb upstream 0.5kb upstream 500 false Chr02: 58564148-58564647 Sorghum bicolor
Sobic.002G196600 0.5kb downstream 0.5kb downstream 8309 true Chr02: 58555839-58564147 Sorghum bicolor
Sobic.002G196600 0.5kb downstream 0.5kb downstream 500 false Chr02: 58555839-58556338 Sorghum bicolor
Sobic.002G196600 1.0kb upstream 1.0kb upstream 8809 true Chr02: 58556339-58565147 Sorghum bicolor
Sobic.002G196600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 58564148-58565147 Sorghum bicolor
Sobic.002G196600 1.0kb downstream 1.0kb downstream 8809 true Chr02: 58555339-58564147 Sorghum bicolor
Sobic.002G196600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 58555339-58556338 Sorghum bicolor
Sobic.002G196600 2.0kb upstream 2.0kb upstream 9809 true Chr02: 58556339-58566147 Sorghum bicolor
Sobic.002G196600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 58564148-58566147 Sorghum bicolor
Sobic.002G196600 2.0kb downstream 2.0kb downstream 9809 true Chr02: 58554339-58564147 Sorghum bicolor
Sobic.002G196600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 58554339-58556338 Sorghum bicolor
Sobic.002G196600 5.0kb upstream 5.0kb upstream 12809 true Chr02: 58556339-58569147 Sorghum bicolor
Sobic.002G196600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 58564148-58569147 Sorghum bicolor
Sobic.002G196600 5.0kb downstream 5.0kb downstream 12809 true Chr02: 58551339-58564147 Sorghum bicolor
Sobic.002G196600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 58551339-58556338 Sorghum bicolor
Sobic.002G196600 10.0kb upstream 10.0kb upstream 17809 true Chr02: 58556339-58574147 Sorghum bicolor
Sobic.002G196600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 58564148-58574147 Sorghum bicolor
Sobic.002G196600 10.0kb downstream 10.0kb downstream 17809 true Chr02: 58546339-58564147 Sorghum bicolor
Sobic.002G196600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 58546339-58556338 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028209 5273 Angiosperm View MSA
122183090 5267 Panicoideae View MSA
124571630 5269 Grass View MSA
121351376 5274 Embryophyte View MSA
123427544 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.441       Low
cufflinks 10.876     High  
cufflinks 5.214        
cufflinks 1.315       Low
cufflinks 14.143     High High
cufflinks 6.692        
cufflinks 10.627        
cufflinks 2.243       Low
cufflinks 7.53        
cufflinks 5.187        
cufflinks 10.316        
cufflinks 8.428        
cufflinks 7.617        
cufflinks 9.693        
cufflinks 8.25        
cufflinks 17.395     High High
cufflinks 11.331        
cufflinks 9.999        
cufflinks 5.977        
cufflinks 9.583        
cufflinks 13.808        
cufflinks 14.829     High High
cufflinks 11.361     High  
cufflinks 12.303     High  
cufflinks 7.13        
cufflinks 6.339     High  
cufflinks 3.13       Low
cufflinks 5.419        
cufflinks 5.674        
cufflinks 11.715        

0 Strain