Gene : Sobic.002G176800 S. bicolor v3.1.1

Defline:  (1 of 1) PTHR20275:SF2 - NADH KINASE Genomic Order:  1807
Name:  ? Sobic.002G176800 Secondary Identifier:  ? PAC:37950675

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5083 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G176800 0.5kb upstream 0.5kb upstream 8496 true Chr02: 55652376-55660871 Sorghum bicolor
Sobic.002G176800 0.5kb upstream 0.5kb upstream 500 false Chr02: 55660372-55660871 Sorghum bicolor
Sobic.002G176800 0.5kb downstream 0.5kb downstream 8496 true Chr02: 55651876-55660371 Sorghum bicolor
Sobic.002G176800 0.5kb downstream 0.5kb downstream 500 false Chr02: 55651876-55652375 Sorghum bicolor
Sobic.002G176800 1.0kb upstream 1.0kb upstream 8996 true Chr02: 55652376-55661371 Sorghum bicolor
Sobic.002G176800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 55660372-55661371 Sorghum bicolor
Sobic.002G176800 1.0kb downstream 1.0kb downstream 8996 true Chr02: 55651376-55660371 Sorghum bicolor
Sobic.002G176800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 55651376-55652375 Sorghum bicolor
Sobic.002G176800 2.0kb upstream 2.0kb upstream 9996 true Chr02: 55652376-55662371 Sorghum bicolor
Sobic.002G176800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 55660372-55662371 Sorghum bicolor
Sobic.002G176800 2.0kb downstream 2.0kb downstream 9996 true Chr02: 55650376-55660371 Sorghum bicolor
Sobic.002G176800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 55650376-55652375 Sorghum bicolor
Sobic.002G176800 5.0kb upstream 5.0kb upstream 12996 true Chr02: 55652376-55665371 Sorghum bicolor
Sobic.002G176800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 55660372-55665371 Sorghum bicolor
Sobic.002G176800 5.0kb downstream 5.0kb downstream 12996 true Chr02: 55647376-55660371 Sorghum bicolor
Sobic.002G176800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 55647376-55652375 Sorghum bicolor
Sobic.002G176800 10.0kb upstream 10.0kb upstream 17996 true Chr02: 55652376-55670371 Sorghum bicolor
Sobic.002G176800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 55660372-55670371 Sorghum bicolor
Sobic.002G176800 10.0kb downstream 10.0kb downstream 17996 true Chr02: 55642376-55660371 Sorghum bicolor
Sobic.002G176800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 55642376-55652375 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182224 5267 Panicoideae View MSA
124579122 5269 Grass View MSA
122049268 5273 Angiosperm View MSA
121346179 5274 Embryophyte View MSA
123425212 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.055       High
cufflinks 0.031     Low Low
cufflinks 0.149       Low
cufflinks 0.279        
cufflinks 0.736       High
cufflinks 0.481        
cufflinks 0.328        
cufflinks 0.174        
cufflinks 0.369        
cufflinks 0.431        
cufflinks 0.28        
cufflinks 0.281        
cufflinks 0.349        
cufflinks 0.226        
cufflinks 0.417        
cufflinks 0.114       Low
cufflinks 0.349        
cufflinks 0.317        
cufflinks 0.123       Low
cufflinks 0.441        
cufflinks 1.343       High
cufflinks 0.303        
cufflinks 0.309        
cufflinks 0.307        
cufflinks 0.098       Low
cufflinks 0.119       Low
cufflinks 0.272        
cufflinks 0.648       High
cufflinks 0.225        
cufflinks 0.498        

0 Strain