Gene : Sobic.002G155100 S. bicolor v3.1.1
Defline:  (1 of 1) 1.1.1.3//2.7.2.4 - Homoserine dehydrogenase // Aspartate kinase / Aspartokinase Genomic Order:  1582
Name:  ? Sobic.002G155100 Secondary Identifier:  ? PAC:37955162
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor HOMOSERSYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-3001 Sorghum bicolor pathologic  
Sbicolor PWY-5097 Sorghum bicolor pathologic  
Sbicolor PWY-724 Sorghum bicolor pathologic  
Sbicolor THRESYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G155100 0.5kb upstream 0.5kb upstream 10343 true Chr02: 47149088-47159430 Sorghum bicolor
Sobic.002G155100 0.5kb upstream 0.5kb upstream 500 false Chr02: 47149088-47149587 Sorghum bicolor
Sobic.002G155100 0.5kb downstream 0.5kb downstream 10343 true Chr02: 47149588-47159930 Sorghum bicolor
Sobic.002G155100 0.5kb downstream 0.5kb downstream 500 false Chr02: 47159431-47159930 Sorghum bicolor
Sobic.002G155100 1.0kb upstream 1.0kb upstream 10843 true Chr02: 47148588-47159430 Sorghum bicolor
Sobic.002G155100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 47148588-47149587 Sorghum bicolor
Sobic.002G155100 1.0kb downstream 1.0kb downstream 10843 true Chr02: 47149588-47160430 Sorghum bicolor
Sobic.002G155100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 47159431-47160430 Sorghum bicolor
Sobic.002G155100 2.0kb upstream 2.0kb upstream 11843 true Chr02: 47147588-47159430 Sorghum bicolor
Sobic.002G155100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 47147588-47149587 Sorghum bicolor
Sobic.002G155100 2.0kb downstream 2.0kb downstream 11843 true Chr02: 47149588-47161430 Sorghum bicolor
Sobic.002G155100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 47159431-47161430 Sorghum bicolor
Sobic.002G155100 5.0kb upstream 5.0kb upstream 14843 true Chr02: 47144588-47159430 Sorghum bicolor
Sobic.002G155100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 47144588-47149587 Sorghum bicolor
Sobic.002G155100 5.0kb downstream 5.0kb downstream 14843 true Chr02: 47149588-47164430 Sorghum bicolor
Sobic.002G155100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 47159431-47164430 Sorghum bicolor
Sobic.002G155100 10.0kb upstream 10.0kb upstream 19843 true Chr02: 47139588-47159430 Sorghum bicolor
Sobic.002G155100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 47139588-47149587 Sorghum bicolor
Sobic.002G155100 10.0kb downstream 10.0kb downstream 19843 true Chr02: 47149588-47169430 Sorghum bicolor
Sobic.002G155100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 47159431-47169430 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180692 5267 Panicoideae View MSA
124568844 5269 Grass View MSA
122043013 5273 Angiosperm View MSA
121350238 5274 Embryophyte View MSA
123423775 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.544       Low
cufflinks 4.492       Low
cufflinks 7.069       Low
cufflinks 9.27       Low
cufflinks 41.444     High High
cufflinks 10.418        
cufflinks 24.268     High  
cufflinks 16.209     High  
cufflinks 30.101     High  
cufflinks 32.829     High  
cufflinks 33.332     High  
cufflinks 26.56     High  
cufflinks 19.448     High  
cufflinks 29.522     High  
cufflinks 20.923     High  
cufflinks 6.81       Low
cufflinks 23.075     High  
cufflinks 27.364     High  
cufflinks 10.73        
cufflinks 16.539     High  
cufflinks 44.909     High High
cufflinks 30.152     High  
cufflinks 29.286     High  
cufflinks 30.616     High  
cufflinks 3.732       Low
cufflinks 5.533       Low
cufflinks 30.47     High  
cufflinks 10.496     High  
cufflinks 32.278     High  
cufflinks 28.771     High  

0 Strain