Gene : Sobic.006G052500 S. bicolor v3.1.1
Defline:  (1 of 2) 1.2.4.2 - Oxoglutarate dehydrogenase (succinyl-transferring) / Oxoglutarate dehydrogenase (lipoamide) Genomic Order:  555
Name:  ? Sobic.006G052500 Secondary Identifier:  ? PAC:37946197
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5084 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G052500 0.5kb upstream 0.5kb upstream 7641 true Chr06: 38421559-38429199 Sorghum bicolor
Sobic.006G052500 0.5kb upstream 0.5kb upstream 500 false Chr06: 38421559-38422058 Sorghum bicolor
Sobic.006G052500 0.5kb downstream 0.5kb downstream 7641 true Chr06: 38422059-38429699 Sorghum bicolor
Sobic.006G052500 0.5kb downstream 0.5kb downstream 500 false Chr06: 38429200-38429699 Sorghum bicolor
Sobic.006G052500 1.0kb upstream 1.0kb upstream 8141 true Chr06: 38421059-38429199 Sorghum bicolor
Sobic.006G052500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 38421059-38422058 Sorghum bicolor
Sobic.006G052500 1.0kb downstream 1.0kb downstream 8141 true Chr06: 38422059-38430199 Sorghum bicolor
Sobic.006G052500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 38429200-38430199 Sorghum bicolor
Sobic.006G052500 2.0kb upstream 2.0kb upstream 9141 true Chr06: 38420059-38429199 Sorghum bicolor
Sobic.006G052500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 38420059-38422058 Sorghum bicolor
Sobic.006G052500 2.0kb downstream 2.0kb downstream 9141 true Chr06: 38422059-38431199 Sorghum bicolor
Sobic.006G052500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 38429200-38431199 Sorghum bicolor
Sobic.006G052500 5.0kb upstream 5.0kb upstream 12141 true Chr06: 38417059-38429199 Sorghum bicolor
Sobic.006G052500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 38417059-38422058 Sorghum bicolor
Sobic.006G052500 5.0kb downstream 5.0kb downstream 12141 true Chr06: 38422059-38434199 Sorghum bicolor
Sobic.006G052500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 38429200-38434199 Sorghum bicolor
Sobic.006G052500 10.0kb upstream 10.0kb upstream 17141 true Chr06: 38412059-38429199 Sorghum bicolor
Sobic.006G052500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 38412059-38422058 Sorghum bicolor
Sobic.006G052500 10.0kb downstream 10.0kb downstream 17141 true Chr06: 38422059-38439199 Sorghum bicolor
Sobic.006G052500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 38429200-38439199 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179314 5267 Panicoideae View MSA
124575001 5269 Grass View MSA
122044869 5273 Angiosperm View MSA
121344749 5274 Embryophyte View MSA
123424102 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.295       Low
cufflinks 15.239     High Low
cufflinks 17.668     High Low
cufflinks 16.735     High Low
cufflinks 25.477     High  
cufflinks 20.884     High  
cufflinks 25.359     High  
cufflinks 26.683     High  
cufflinks 37.55     High  
cufflinks 47.461     High High
cufflinks 33.017     High  
cufflinks 41.061     High High
cufflinks 38.558     High High
cufflinks 39.685     High High
cufflinks 33.774     High  
cufflinks 18.765     High  
cufflinks 21.936     High  
cufflinks 23.1     High  
cufflinks 26.429     High  
cufflinks 21.032     High  
cufflinks 15.416     High Low
cufflinks 33.151     High  
cufflinks 42.364     High High
cufflinks 44.601     High High
cufflinks 17.034     High Low
cufflinks 21.132     High  
cufflinks 31.472     High  
cufflinks 12.427     High Low
cufflinks 28.29     High  
cufflinks 28.161     High  

0 Strain