Gene : Sobic.002G152100 S. bicolor v3.1.1
Defline:  (1 of 3) PTHR11452//PTHR11452:SF32 - ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE // SUBFAMILY NOT NAMED Genomic Order:  1552
Name:  ? Sobic.002G152100 Secondary Identifier:  ? PAC:37949757
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-1301 Sorghum bicolor pathologic  
Sbicolor PWY-6527 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G152100 0.5kb upstream 0.5kb upstream 3697 true Chr02: 45380183-45383879 Sorghum bicolor
Sobic.002G152100 0.5kb upstream 0.5kb upstream 500 false Chr02: 45380183-45380682 Sorghum bicolor
Sobic.002G152100 0.5kb downstream 0.5kb downstream 3697 true Chr02: 45380683-45384379 Sorghum bicolor
Sobic.002G152100 0.5kb downstream 0.5kb downstream 500 false Chr02: 45383880-45384379 Sorghum bicolor
Sobic.002G152100 1.0kb upstream 1.0kb upstream 4197 true Chr02: 45379683-45383879 Sorghum bicolor
Sobic.002G152100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 45379683-45380682 Sorghum bicolor
Sobic.002G152100 1.0kb downstream 1.0kb downstream 4197 true Chr02: 45380683-45384879 Sorghum bicolor
Sobic.002G152100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 45383880-45384879 Sorghum bicolor
Sobic.002G152100 2.0kb upstream 2.0kb upstream 5197 true Chr02: 45378683-45383879 Sorghum bicolor
Sobic.002G152100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 45378683-45380682 Sorghum bicolor
Sobic.002G152100 2.0kb downstream 2.0kb downstream 5197 true Chr02: 45380683-45385879 Sorghum bicolor
Sobic.002G152100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 45383880-45385879 Sorghum bicolor
Sobic.002G152100 5.0kb upstream 5.0kb upstream 8197 true Chr02: 45375683-45383879 Sorghum bicolor
Sobic.002G152100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 45375683-45380682 Sorghum bicolor
Sobic.002G152100 5.0kb downstream 5.0kb downstream 8197 true Chr02: 45380683-45388879 Sorghum bicolor
Sobic.002G152100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 45383880-45388879 Sorghum bicolor
Sobic.002G152100 10.0kb upstream 10.0kb upstream 13197 true Chr02: 45370683-45383879 Sorghum bicolor
Sobic.002G152100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 45370683-45380682 Sorghum bicolor
Sobic.002G152100 10.0kb downstream 10.0kb downstream 13197 true Chr02: 45380683-45393879 Sorghum bicolor
Sobic.002G152100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 45383880-45393879 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192526 5267 Panicoideae View MSA
124466351 5269 Grass View MSA
122048958 5273 Angiosperm View MSA
121347217 5274 Embryophyte View MSA
123428348 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.013     Low Low
cufflinks 0.025     Low Low
cufflinks 0.163        
cufflinks 0.035     Low  
cufflinks 0.168        
cufflinks 0.026     Low Low
cufflinks 0.03     Low  
cufflinks 0.062     Low  
cufflinks 0.037     Low  
cufflinks 0.1        
cufflinks 0.116        
cufflinks 0.468       High
cufflinks 0.095        
cufflinks 0.135        
cufflinks 0.801       High
cufflinks 0.036     Low  
cufflinks 0.07     Low  
cufflinks 0.046     Low  
cufflinks 0.014     Low Low
cufflinks 0.084     Low  
cufflinks 0.046     Low  
cufflinks 0.299       High
cufflinks 0.363       High
cufflinks 0.268       High
cufflinks 0.029     Low Low
cufflinks 0.064        
cufflinks 2.221       High
cufflinks 0.177        
cufflinks 0.046     Low  
cufflinks 0.093        

0 Strain