Gene : Sobic.006G129700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10742//PTHR10742:SF229 - AMINE OXIDASE // PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1352
Name:  ? Sobic.006G129700 Secondary Identifier:  ? PAC:37946163
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CHLOROPHYLL-SYN Sorghum bicolor pathologic  
Sbicolor HEME-BIOSYNTHESIS-II Sorghum bicolor pathologic  
Sbicolor PWY-5918 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G129700 0.5kb upstream 0.5kb upstream 7231 true Chr06: 49414976-49422206 Sorghum bicolor
Sobic.006G129700 0.5kb upstream 0.5kb upstream 500 false Chr06: 49414976-49415475 Sorghum bicolor
Sobic.006G129700 0.5kb downstream 0.5kb downstream 7231 true Chr06: 49415476-49422706 Sorghum bicolor
Sobic.006G129700 0.5kb downstream 0.5kb downstream 500 false Chr06: 49422207-49422706 Sorghum bicolor
Sobic.006G129700 1.0kb upstream 1.0kb upstream 7731 true Chr06: 49414476-49422206 Sorghum bicolor
Sobic.006G129700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 49414476-49415475 Sorghum bicolor
Sobic.006G129700 1.0kb downstream 1.0kb downstream 7731 true Chr06: 49415476-49423206 Sorghum bicolor
Sobic.006G129700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 49422207-49423206 Sorghum bicolor
Sobic.006G129700 2.0kb upstream 2.0kb upstream 8731 true Chr06: 49413476-49422206 Sorghum bicolor
Sobic.006G129700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 49413476-49415475 Sorghum bicolor
Sobic.006G129700 2.0kb downstream 2.0kb downstream 8731 true Chr06: 49415476-49424206 Sorghum bicolor
Sobic.006G129700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 49422207-49424206 Sorghum bicolor
Sobic.006G129700 5.0kb upstream 5.0kb upstream 11731 true Chr06: 49410476-49422206 Sorghum bicolor
Sobic.006G129700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 49410476-49415475 Sorghum bicolor
Sobic.006G129700 5.0kb downstream 5.0kb downstream 11731 true Chr06: 49415476-49427206 Sorghum bicolor
Sobic.006G129700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 49422207-49427206 Sorghum bicolor
Sobic.006G129700 10.0kb upstream 10.0kb upstream 16731 true Chr06: 49405476-49422206 Sorghum bicolor
Sobic.006G129700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 49405476-49415475 Sorghum bicolor
Sobic.006G129700 10.0kb downstream 10.0kb downstream 16731 true Chr06: 49415476-49432206 Sorghum bicolor
Sobic.006G129700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 49422207-49432206 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175388 5267 Panicoideae View MSA
124571496 5269 Grass View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.628        
cufflinks 0.349       Low
cufflinks 0.915       Low
cufflinks 1.179        
cufflinks 2.432        
cufflinks 1.809        
cufflinks 1.764        
cufflinks 1.061        
cufflinks 2.309        
cufflinks 2.274        
cufflinks 2.11        
cufflinks 1.987        
cufflinks 1.549        
cufflinks 2.058        
cufflinks 1.877        
cufflinks 0.686       Low
cufflinks 1.545        
cufflinks 2.139        
cufflinks 0.883       Low
cufflinks 1.592        
cufflinks 3.149       High
cufflinks 2.035        
cufflinks 1.782        
cufflinks 1.712        
cufflinks 0.775       Low
cufflinks 0.471       Low
cufflinks 1.642        
cufflinks 0.923       Low
cufflinks 3.246       High
cufflinks 2.708       High

0 Strain