Gene : Sobic.002G284000 S. bicolor v3.1.1
Defline:  (1 of 5) K01581 - ornithine decarboxylase (E4.1.1.17, ODC1, speC, speF) Genomic Order:  2910
Name:  ? Sobic.002G284000 Secondary Identifier:  ? PAC:37954864
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor POLYAMINSYN3-PWY Sorghum bicolor pathologic  
Sbicolor PWY-46 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G284000 0.5kb upstream 0.5kb upstream 2472 true Chr02: 66485829-66488300 Sorghum bicolor
Sobic.002G284000 0.5kb upstream 0.5kb upstream 500 false Chr02: 66485829-66486328 Sorghum bicolor
Sobic.002G284000 0.5kb downstream 0.5kb downstream 2472 true Chr02: 66486329-66488800 Sorghum bicolor
Sobic.002G284000 0.5kb downstream 0.5kb downstream 500 false Chr02: 66488301-66488800 Sorghum bicolor
Sobic.002G284000 1.0kb upstream 1.0kb upstream 2972 true Chr02: 66485329-66488300 Sorghum bicolor
Sobic.002G284000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 66485329-66486328 Sorghum bicolor
Sobic.002G284000 1.0kb downstream 1.0kb downstream 2972 true Chr02: 66486329-66489300 Sorghum bicolor
Sobic.002G284000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 66488301-66489300 Sorghum bicolor
Sobic.002G284000 2.0kb upstream 2.0kb upstream 3972 true Chr02: 66484329-66488300 Sorghum bicolor
Sobic.002G284000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 66484329-66486328 Sorghum bicolor
Sobic.002G284000 2.0kb downstream 2.0kb downstream 3972 true Chr02: 66486329-66490300 Sorghum bicolor
Sobic.002G284000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 66488301-66490300 Sorghum bicolor
Sobic.002G284000 5.0kb upstream 5.0kb upstream 6972 true Chr02: 66481329-66488300 Sorghum bicolor
Sobic.002G284000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 66481329-66486328 Sorghum bicolor
Sobic.002G284000 5.0kb downstream 5.0kb downstream 6972 true Chr02: 66486329-66493300 Sorghum bicolor
Sobic.002G284000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 66488301-66493300 Sorghum bicolor
Sobic.002G284000 10.0kb upstream 10.0kb upstream 11972 true Chr02: 66476329-66488300 Sorghum bicolor
Sobic.002G284000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 66476329-66486328 Sorghum bicolor
Sobic.002G284000 10.0kb downstream 10.0kb downstream 11972 true Chr02: 66486329-66498300 Sorghum bicolor
Sobic.002G284000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 66488301-66498300 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121893477 5273 Angiosperm View MSA
122173709 5267 Panicoideae View MSA
124464374 5269 Grass View MSA
121164079 5274 Embryophyte View MSA
123428095 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.175        
cufflinks 0.006     Low Low
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low Low
cufflinks 0.128        
cufflinks 0.771       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.098        
cufflinks 0.12        
cufflinks 0.008     Low Low
cufflinks 0.054     Low  
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.146        
cufflinks 0.09     Low  
cufflinks 0.091     Low  
cufflinks 0.019     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.104     Low  
cufflinks 0.071     Low  
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 0.456       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.608       High
cufflinks 0.027     Low  

0 Strain