Gene : Sobic.002G275700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12280:SF20 - PANTOTHENATE KINASE 4 Genomic Order:  2826
Name:  ? Sobic.002G275700 Secondary Identifier:  ? PAC:37950465
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PANTO-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.002G275700 0.5kb upstream 0.5kb upstream 9997 true Chr02: 65842200-65852196 Sorghum bicolor
Sobic.002G275700 0.5kb upstream 0.5kb upstream 500 false Chr02: 65842200-65842699 Sorghum bicolor
Sobic.002G275700 0.5kb downstream 0.5kb downstream 9997 true Chr02: 65842700-65852696 Sorghum bicolor
Sobic.002G275700 0.5kb downstream 0.5kb downstream 500 false Chr02: 65852197-65852696 Sorghum bicolor
Sobic.002G275700 1.0kb upstream 1.0kb upstream 10497 true Chr02: 65841700-65852196 Sorghum bicolor
Sobic.002G275700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 65841700-65842699 Sorghum bicolor
Sobic.002G275700 1.0kb downstream 1.0kb downstream 10497 true Chr02: 65842700-65853196 Sorghum bicolor
Sobic.002G275700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 65852197-65853196 Sorghum bicolor
Sobic.002G275700 2.0kb upstream 2.0kb upstream 11497 true Chr02: 65840700-65852196 Sorghum bicolor
Sobic.002G275700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 65840700-65842699 Sorghum bicolor
Sobic.002G275700 2.0kb downstream 2.0kb downstream 11497 true Chr02: 65842700-65854196 Sorghum bicolor
Sobic.002G275700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 65852197-65854196 Sorghum bicolor
Sobic.002G275700 5.0kb upstream 5.0kb upstream 14497 true Chr02: 65837700-65852196 Sorghum bicolor
Sobic.002G275700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 65837700-65842699 Sorghum bicolor
Sobic.002G275700 5.0kb downstream 5.0kb downstream 14497 true Chr02: 65842700-65857196 Sorghum bicolor
Sobic.002G275700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 65852197-65857196 Sorghum bicolor
Sobic.002G275700 10.0kb upstream 10.0kb upstream 19497 true Chr02: 65832700-65852196 Sorghum bicolor
Sobic.002G275700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 65832700-65842699 Sorghum bicolor
Sobic.002G275700 10.0kb downstream 10.0kb downstream 19497 true Chr02: 65842700-65862196 Sorghum bicolor
Sobic.002G275700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 65852197-65862196 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177667 5267 Panicoideae View MSA
124579086 5269 Grass View MSA
122044424 5273 Angiosperm View MSA
121351154 5274 Embryophyte View MSA
123423808 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.359       Low
cufflinks 14.846     High  
cufflinks 16.53     High High
cufflinks 13.503     High  
cufflinks 8.884        
cufflinks 11.021        
cufflinks 12.567     High  
cufflinks 11.551     High  
cufflinks 15.172     High  
cufflinks 16.321     High High
cufflinks 11.829        
cufflinks 13.072     High  
cufflinks 13.908     High  
cufflinks 11.758     High  
cufflinks 17.014     High High
cufflinks 13.086     High  
cufflinks 11.799     High  
cufflinks 12.981     High  
cufflinks 10.52        
cufflinks 11.358        
cufflinks 9.195        
cufflinks 10.118        
cufflinks 12.482     High  
cufflinks 11.241     High  
cufflinks 19.201     High High
cufflinks 18.909     High High
cufflinks 16.53     High High
cufflinks 2.998       Low
cufflinks 14.1     High  
cufflinks 15.344     High  

0 Strain