Gene : Sobic.006G135900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23077//PTHR23077:SF54 - AAA-FAMILY ATPASE // CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B Genomic Order:  1420
Name:  ? Sobic.006G135900 Secondary Identifier:  ? PAC:37949354
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G135900 0.5kb upstream 0.5kb upstream 4387 true Chr06: 49874950-49879336 Sorghum bicolor
Sobic.006G135900 0.5kb upstream 0.5kb upstream 500 false Chr06: 49874950-49875449 Sorghum bicolor
Sobic.006G135900 0.5kb downstream 0.5kb downstream 4387 true Chr06: 49875450-49879836 Sorghum bicolor
Sobic.006G135900 0.5kb downstream 0.5kb downstream 500 false Chr06: 49879337-49879836 Sorghum bicolor
Sobic.006G135900 1.0kb upstream 1.0kb upstream 4887 true Chr06: 49874450-49879336 Sorghum bicolor
Sobic.006G135900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 49874450-49875449 Sorghum bicolor
Sobic.006G135900 1.0kb downstream 1.0kb downstream 4887 true Chr06: 49875450-49880336 Sorghum bicolor
Sobic.006G135900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 49879337-49880336 Sorghum bicolor
Sobic.006G135900 2.0kb upstream 2.0kb upstream 5887 true Chr06: 49873450-49879336 Sorghum bicolor
Sobic.006G135900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 49873450-49875449 Sorghum bicolor
Sobic.006G135900 2.0kb downstream 2.0kb downstream 5887 true Chr06: 49875450-49881336 Sorghum bicolor
Sobic.006G135900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 49879337-49881336 Sorghum bicolor
Sobic.006G135900 5.0kb upstream 5.0kb upstream 8887 true Chr06: 49870450-49879336 Sorghum bicolor
Sobic.006G135900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 49870450-49875449 Sorghum bicolor
Sobic.006G135900 5.0kb downstream 5.0kb downstream 8887 true Chr06: 49875450-49884336 Sorghum bicolor
Sobic.006G135900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 49879337-49884336 Sorghum bicolor
Sobic.006G135900 10.0kb upstream 10.0kb upstream 13887 true Chr06: 49865450-49879336 Sorghum bicolor
Sobic.006G135900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 49865450-49875449 Sorghum bicolor
Sobic.006G135900 10.0kb downstream 10.0kb downstream 13887 true Chr06: 49875450-49889336 Sorghum bicolor
Sobic.006G135900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 49879337-49889336 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180838 5267 Panicoideae View MSA
124573109 5269 Grass View MSA
122047807 5273 Angiosperm View MSA
121345227 5274 Embryophyte View MSA
123426108 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.404     High High
cufflinks 0.472       Low
cufflinks 1.65        
cufflinks 3.658        
cufflinks 4.043        
cufflinks 4.414        
cufflinks 2.9        
cufflinks 0.881       Low
cufflinks 4.674        
cufflinks 4.983        
cufflinks 4.239        
cufflinks 4.846        
cufflinks 2.963        
cufflinks 4.771        
cufflinks 2.993        
cufflinks 0.987       Low
cufflinks 3.055        
cufflinks 3.274        
cufflinks 1.112       Low
cufflinks 3.528        
cufflinks 8.331       High
cufflinks 5.675        
cufflinks 5.21        
cufflinks 4.869        
cufflinks 1.111       Low
cufflinks 0.55       Low
cufflinks 3.913        
cufflinks 4.503        
cufflinks 1.789        
cufflinks 5.19        

0 Strain